1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgtttgctacatattatagactatttttcttagttgtgatatttatgcatttaaacatccatatgatcgtccttgcagGCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGAAGTTTCCAATATGTTGCTGATCTG
species | Zea mays |
transcript | GRMZM2G359234_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAG GCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGAEST: gi|78123100|gb|DV541484.1|DV541484
genomic: CTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgc ... gtccttgcagGCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGA
EST: CGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAG GCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGAEST: gi|71305243|gb|DR788759.1|DR788759
genomic: CGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgc ... gtccttgcagGCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGA
EST: CTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAG GCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGA
genomic: CTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgc ... gtccttgcagGCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGA
tttttcttagttgtgatatttatgcatttaaacatccatatgatcgtccttgcagGCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGAAGTTTCCAATATGTTGCTGATCTG
tcgtcctt CT-rich tract
atatttatgcatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttgctacatattatagactatttttcttagttgtgatatttatgcatttaaacatccatatgatcgtccttgcagGCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGAAGTTTCCAATATGTTGCTGATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT