1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgtgaagagttaatatttattattgtgtttcaatttctttgtttgcacctgtttggagataattgaggtttatgtgttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG
species | Zea mays |
transcript | GRMZM2G358059_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|60347982|gb|DN214955.1|DN214955
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGAEST: gi|86467986|gb|DY234356.1|DY234356
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGA
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|149074502|gb|EE162898.2|EE162898
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|33103386|gb|CF063346.1|CF063346
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ATTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAAGAGTEST: gi|7162446|gb|AW520068.1|AW520068
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGT
EST: AGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|71432523|gb|DR813573.1|DR813573
genomic: AGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAA-TCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|33093068|gb|CF053062.1|CF053062
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGCAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGEST: gi|18180018|gb|BM381228.1|BM381228
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|149074540|gb|EE162939.2|EE162939
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|149074503|gb|EE162899.2|EE162899
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|86470502|gb|DY236872.1|DY236872
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: GAAAATCAAGAACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|33095007|gb|CF055001.1|CF055001
genomic: GAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGEST: gi|71442155|gb|DR823205.1|DR823205
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|20811062|gb|BQ295540.1|BQ295540
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|32944681|gb|CF049500.1|CF049500
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|9743085|gb|BE519233.1|BE519233
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGEST: gi|148951386|gb|EC897102.2|EC897102
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGG
EST: ACTGGGATATTCTTCCCCTTAAGAAAATCA-GGACCCAGAGGCTAAAAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAACEST: gi|71438877|gb|DR819927.1|DR819927
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAEST: gi|148963937|gb|EE015058.2|EE015058
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACA
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGGACA-GAAEST: gi|6021565|gb|AW066493.1|AW066493
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGG-ACAAGAA
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGGACATTCCTGACCCTGAGGACAAGAAGEST: gi|5268655|gb|AI770619.1|AI770619
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|148937046|gb|EC881219.2|EC881219
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: CTGGGATATTC-TCCCCCTTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|32938680|gb|CF043499.1|CF043499
genomic: CTGGGATATTCTTCCCCC-TAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: CTGGGATATTTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTEST: gi|4647548|gb|AI622623.1|AI622623
genomic: CTGGGATATT-CTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGT
EST: AATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|32939280|gb|CF044099.1|CF044099
genomic: AATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAA-AAA-TCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTEST: gi|21432285|gb|BQ547775.1|BQ547775
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGT
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|32912239|gb|CF017051.1|CF017051
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|9956198|gb|BE643632.1|BE643632
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGACGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|60339239|gb|DN206212.1|DN206212
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTEST: gi|32940367|gb|CF045186.1|CF045186
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATT
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|32939935|gb|CF044754.1|CF044754
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAA-AAA-TCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTEST: gi|29543548|gb|CB603930.1|CB603930
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGT
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAAGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTEST: gi|148931876|gb|EC877340.2|EC877340
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCT
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|33094305|gb|CF054299.1|CF054299
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGGAG CCTGAGGACTGGGATGACAAGGAGTACEST: gi|8383235|gb|BE056178.1|BE056178
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTAC
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|7216518|gb|AW562640.1|AW562640
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|71759740|gb|DR957677.1|DR957677
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|148937047|gb|EC881220.2|EC881220
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|7162466|gb|AW520088.1|AW520088
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: AGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGEST: gi|71442156|gb|DR823206.1|DR823206
genomic: AGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGATCCTGAGGACAAGAAGEST: gi|148963936|gb|EE015057.2|EE015057
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
aatttctttgtttgcacctgtttggagataattgaggtttatgtgttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG
tgttgat putative branch site (score: 3123)
agataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgaagagttaatatttattattgtgtttcaatttctttgtttgcacctgtttggagataattgaggtttatgtgttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC