1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgttgtctgcttattctcaacctgctcattgtgatgttattttaaatgtaataaatgatggaaaatacgagccattgacctctctcatttttctttctggttgtaacactactttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCAT
species | Zea mays |
transcript | GRMZM2G357972_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAG ATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGAEST: gi|78125802|gb|DV544186.1|DV544186
genomic: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAGgtgttgtctg ... ctttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGA
EST: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAG ATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGAEST: gi|76926465|gb|DV170878.1|DV170878
genomic: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAGgtgttgtctg ... ctttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGA
EST: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAG ATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGAEST: gi|24767854|gb|CA402990.1|CA402990
genomic: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAGgtgttgtctg ... ctttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGA
EST: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAG ATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGAEST: gi|5296185|gb|AI782865.1|AI782865
genomic: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAGgtgttgtctg ... ctttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGA
EST: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAG ATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGAEST: gi|32931110|gb|CF035922.1|CF035922
genomic: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAGgtgttgtctg ... ctttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGA
EST: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAG ATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGAEST: gi|22541936|gb|BU092374.1|BU092374
genomic: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAGgtgttgtctg ... ctttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGA
EST: TTCCTGGATGCGACCTTTTGTGGGAATGTTGGGAGATTCATCAACCCCAG ATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCACGEST: gi|5915516|gb|AW053157.1|AW053157
genomic: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAGgtgttgtctg ... ctttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCA-G
EST: GGAGATTCATCAACCACAG ATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGAEST: gi|50338839|gb|CO533965.1|CO533965
genomic: GGAGATTCATCAACCACAGgtgttgtctg ... ctttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGA
EST: ACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAG ATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGAEST: gi|76926464|gb|DV170877.1|DV170877
genomic: ACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAGgtgttgtctg ... ctttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGA
EST: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAG ATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGAEST: gi|78091874|gb|DV520248.1|DV520248
genomic: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAGgtgttgtctg ... ctttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGA
EST: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAG ATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGA
genomic: TTCCTGGATGCGACATTTTGTGGGAATGTTGGGAGATTCATCAACCACAGgtgttgtctg ... ctttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGA
acgagccattgacctctctcatttttctttctggttgtaacactactttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCAT
ttgtaac putative branch site (score: 106)
ctttacct putative PPT
atttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttgtctgcttattctcaacctgctcattgtgatgttattttaaatgtaataaatgatggaaaatacgagccattgacctctctcatttttctttctggttgtaacactactttacctagATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA