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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacccattggtgatgctgcttctcttaacgttgaacttcatttgcttcatatatttgacatctgcttctcattctgacaaccctaattaaatgtatgcagCATTTGTTGATGTTTCTCCCGAAGAGTTGCAGCAAAAGAACCTCCAATCTTCACCGGAGACGGTAGATGTAAAACATGATAGTACATACAGTGAAAGTAA

Basic information

species Zea mays
transcript GRMZM2G353213_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G353213_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g35900.1 (Oryza sativa), 3'ss of exon 5
----------------------------------------tacccattggtgatgctgcttctc-ttaacgttgaacttca--tttgcttcatatatttgacatctgcttctcattctgacaaccctaattaaatgtatgcagCATTTGTTGATGTTTCTCCCGAAGAGTTGCAGCAAAAGAACCTCCAATCTTCACCGGAGACGGTAGATGTAAAACATGATAGTACATACAGTGAAAGTAA
                                             || || ||||  |||| |  |||  ||  ||  | |  ||| |||||||  |||| |||     ||||||  |    |   |||  |||||| |||||| |||||||| |||||||| |||||||||||||||||| | || |||||||||| |||||| || |||||||||  ||| |||| | | ||||||| || 
gtattggccgtttatctctgagaattcttctccaactatcagtgaataggggatggagcttgtgattagtgtctaatcttatgttttcttcatacttttgtcatgcatatctcatgtt----attgtaacaaaatgtttgcagCCTTTGTTGACGTTTCTCCTGAAGAGTTGCAGCAAAAGGAACTTCAATCTTCACTGGAGACAGTGGATGTAAAAAGTGAGAGTAAACAGAGTGAAACTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91055447|gb|EB165865.1|EB165865
EST:     ATCGAAAGAGGTGGATGTTACTGAAACGCCNAAACCTTCAAAGAAGTTTG                         CATTTGTTGATGTTTCTCC
genomic: ATCGAAAGAGGTGGATGTTACTGAAACGCCAAAACCTTCAAAGAAGTTTGgtatgacatt ... atgtatgcagCATTTGTTGATGTTTCTCC
EST: gi|71448507|gb|DR829557.1|DR829557
EST:     ATCGAAAGAGGTGGATGTTACTGAAACGCCAAAACCTTCAAAGAAGTTTG                         CATTTGTTGATGTTTCTCCCGAAGAGTTGCAGCAAAAGAACCTCCAATCTT
genomic: ATCGAAAGAGGTGGATGTTACTGAAACGCCAAAACCTTCAAAGAAGTTTGgtatgacatt ... atgtatgcagCATTTGTTGATGTTTCTCCCGAAGAGTTGCAGCAAAAGAACCTCCAATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatatatttgacatctgcttctcattctgacaaccctaattaaatgtatgcagCATTTGTTGATGTTTCTCCCGAAGAGTTGCAGCAAAAGAACCTCCAATCTTCACCGGAGACGGTAGATGTAAAACATGATAGTACATACAGTGAAAGTAA
                                      taattaaatgtat  TA-rich tract