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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttaaacttcctgaagggaccaatagcacctaggtcagtattcctcccatttttatggtcaatggattctattcctcatccagaatcatgagttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCTTATTGTGGGAACAG

Basic information

species Zea mays
transcript GRMZM2G352941_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G352941_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 3'ss of exon 3
gtacttaaacttcctgaagggaccaatagcacctaggtcagtattcctc-ccatttttatggtcaatggattctattcctcatccagaatcatgagttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCTTATTGTGGGAACAG
                                    || ||||||||    ||| || |    || |   |||| ||         |  || |     |||  | ||    ||||   | |  |      || ||||||| ||  ||||||||||   ||||||||| ||||||||||| ||||||||||||||||||||| |  |||||||||||
------------------------------------gtaagtattccctgtcatgttcacatgcagttacttctgttaacggatttgtgtccttcaacaaaggtccactcaagatatcacttctcttgacttatgcagTACAACACTCAGTTCAAATATTTTGAACCACTAGAATACAACTATGATGTCTGTGAAACTATCCTTCTGTGGGAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagaatcatgagttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCTTATTGTGGGAACAG
                                            cttttttgc  CT-rich tract
        atgagttaaatatt  TA-rich tract