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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttgtacttgcgagccctccaggtcagtaccttcgcattggtgcagctgatatctccgcttcgtattcctgtttaactaaccttacattttgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG

Basic information

species Zea mays
transcript GRMZM2G352837_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 17
gttgtacttgcgagccctccaggtcagtaccttcgcattggtgcagctgat-atctccgcttcgtattcctgtttaactaaccttacattttgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG
             |  ||     ||  ||  |||  ||    | |  | || |||||   || | ||   | || |||      |  || ||||   |||||||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||
-------------gttctttgcttct-taagttctgatgacagta--taatgatctcttgttagaatatttcttgaaccgtgtctgtatattgt---gcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG

upper sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 16
gttgtacttgcgagccctccaggtcagtaccttcgcattggtgcagctgatatctccgcttcgtat-tcctgtttaactaaccttacattttgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG
        |     | | |||  |  ||   ||   |||  ||    |  ||| |   |        | || ||| ||| |    ||  ||| |  ||||||||||| |||||||||| ||||| || ||||  ||||||||||| ||||  ||||| ||||||
-------gtaatgactcaccaaat--gtgttttattattactggttttcttatttaacccaaaagccttctcttttactgattacactatttttggtgcagCATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAG

upper sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 17
gttgtacttgcgagccctccaggtcagtaccttcgcattggtgcagctgatatctccgcttcgtattcctgtttaactaaccttacattt-tgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG
             |  ||     ||  ||  |||  ||   || |  | || |   |  ||   | |  |  ||    ||||||   | | | |  ||||||||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||
-------------gttctttgcttct-taagttctgatgactgta--taatgttctctttttagaatatttcttg---aaccttgtctgtgtattgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG

upper sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 15
gttgtacttgcgagccctccaggtcagtaccttcgcattggtg--cagctgatatctccgcttcgtattcctgtttaactaaccttacattttg-taatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG
                     | ||  | | |      |  ||     ||| ||| ||   |  | ||   |  || |     |||   | ||| |  |||||||||| || ||||||||||| ||||| |||| |||||| ||||| |||| ||| ||||| |||
---------------------gttctttgcttctattcttatgactgactgttatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttgtgcagCATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAG

upper sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 16
gttgtacttgcgagccctccaggtcagtacc-ttcgcattggtgcagctgatatctccgcttcgtattcctgtttaactaaccttacattttgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG
        |     | | |||  |  ||    |||  | ||||    || || |  || |   |   | || ||| | | |    |   ||| |  ||||||||||| |||||||||| ||||| || ||||  ||||||||||| ||||  ||||| ||||||
-------gtaatgactcaccaaatgtgttttattcttactggtttt-cttatttaacc-caaaggccttctcttttattgattacattatttttggtgcagCATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAG

upper sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G39360.1 (Glycine max), 3'ss of exon 17
gttgtacttgcgagccctccaggtcagtaccttcgcattggtg--cagctgatatctccgcttcgtattcctgtttaactaaccttacattttg-taatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG
                     | ||  | | ||     |  ||     |||  || ||   |  | ||   |  || |     |||   | ||| | ||||||||||| || || |||||||| ||||| |||| |||||| ||||| |||| ||| |||||||||
---------------------gttctttgcttttattcttatgactgactgtaatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttatgcagCATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAG

upper sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 17
gttgtacttgcgagccctccaggtcagtaccttcgcattggtgcagctgatatctccgcttcgtattcctgtttaactaaccttacattt-tgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG
         |      ||| | |||  | | ||   |||  ||   || |||  |    ||  | ||||  | |||||    || | |||   |  ||||||||||||||||||| ||||||||||| ||||  ||||| || || ||||  ||||| ||||||
---------gtttttgctcaatgtc--ttctttaatattcttg-gcctaatagatgtatttttttttcccctctaacttcgtttccttttgctttgtgcagCATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAG

upper sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 17
gttgtacttgcgagccctccaggtcagtaccttcgcattggtgcagctgatatctccgcttcgtattcctgtttaactaaccttacattttgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG
   ||   | |  |   |  |   || |     ||      |  |  |   |||| |   ||   ||||   ||   |  | ||  ||||     ||||||||||||||||||| |||||||| || ||||  |||||||| || ||||  || || ||||||
---gttggtacatgtttttta--ccatttttaccggccaaatagatttatcatcttc---tcaccttccaacttcttttccttttgattt----gtgcagCATTACTCAGAGTTACCTGATATAAAACGTGTAATTGTAAACACACATGCTATCGAGCCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgatatctccgcttcgtattcctgtttaactaaccttacattttgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG
                                     ttacattttgtaat  TA-rich tract