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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctttccacacttctatttctttttttgttttctgattacttctgtttaatttgtgcagGGTGTAATTGAGTGCCCCAACCCAGACAATGACATACGGAGGTTTGATGCTAACATGCGCTTGTTCCTCCCTATAATTGACAATGAAAAAAGTCCTTTGA

Basic information

species Zea mays
transcript GRMZM2G347447_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G347447_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g28460.1 (Oryza sativa), 3'ss of exon 4
gtgagtctttccac-acttctatttc------tttttttg---ttttctgattacttctgtttaatttgtgcagGGTGTAATTGAGTGCCCCAACCCAGACAATGACATACGGAGGTTTGATGCTAACATGCGCTTGTTCCTCCCTATAATTGACAATGAAAAAAGTCCTTTGA
|||| ||||||  | ||||  | |||      || | |||    |||||||||    |  | | | ||| |||||||||| |||||||| |||||||||| ||||||||| | || ||||| ||||||||||||||||| |  ||||| ||||| | ||||||| ||||||| |
gtgaatctttcttctactttcaattcgttttgttctcttgcacctttctgattgtacccctctgaattg-gcagGGTGTAGTTGAGTGCTCCAACCCAGATAATGACATAAGAAGATTTGACGCTAACATGCGCTTGTTTCCTCCTATCATTGATAGTGAAAAATGTCCTTTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93013258|gb|EB638778.1|EB638778
EST:     TTCCTCCAATTTCTGCTAACTTGTCAGTAGAGCAGCTAGGAAAAGTCAAG                         GGTGTAATTGAGTGCCCCAACCCAGACAATGACATACGGAGGTTTGATGCT
genomic: TTCCTCCAATTTCTGCTAACTTGTCAGTAGAGCAGCTAGGAAAAGTCAAGgtgagtcttt ... atttgtgcagGGTGTAATTGAGTGCCCCAACCCAGACAATGACATACGGAGGTTTGATGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccacacttctatttctttttttgttttctgattacttctgtttaatttgtgcagGGTGTAATTGAGTGCCCCAACCCAGACAATGACATACGGAGGTTTGATGCTAACATGCGCTTGTTCCTCCCTATAATTGACAATGAAAAAAGTCCTTTGA
       ttctatttcttttttt  TA-rich tract