1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gctatcccctttattaattatttattatattattgctaggtttctttggtccatgtactttttttttgtgaaacatgtgcatcattctttggacatgcagGTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCACTAATACAACAGAATGCTCCAAACCCATTTTCGACAAGCAATCCATTTTC
species | Zea mays |
transcript | GRMZM2G344924_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAATTGAGGTGGGAAGACTACCAGCGTGGAGATAAGG GTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCACEST: gi|78091213|gb|DV519587.1|DV519587
genomic: GAATTGAGGTGGGAAGACTACCAGCGTGGAGATAAGGgtgaggaaaa ... ggacatgcagGTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCAC
EST: GAGGTGGGAAGACTACCAGCGTGGAGATAAGG GTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCACEST: gi|211242526|gb|FL257383.1|FL257383
genomic: GAGGTGGGAAGACTACCAGCGTGGAGATAAGGgtgaggaaaa ... ggacatgcagGTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCAC
EST: GAATTGAGGTGGGAAGACTACCAGCGTGGAGATAAGG GTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCACEST: gi|31358918|gb|CD443275.1|CD443275
genomic: GAATTGAGGTGGGAAGACTACCAGCGTGGAGATAAGGgtgaggaaaa ... ggacatgcagGTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCAC
EST: CAAGAGTCATGAAGAATTGAGGTGGGAAGACTACCAGCGTGGAGATAAGG GTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCACEST: gi|211242528|gb|FL257385.1|FL257385
genomic: CAAGAGTCATGAAGAATTGAGGTGGGAAGACTACCAGCGTGGAGATAAGGgtgaggaaaa ... ggacatgcagGTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCAC
EST: GAATTGAGGTGGGAAGACTACCAGCGTGGAGATAAGG GTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCAC
genomic: GAATTGAGGTGGGAAGACTACCAGCGTGGAGATAAGGgtgaggaaaa ... ggacatgcagGTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCAC
ttggtccatgtactttttttttgtgaaacatgtgcatcattctttggacatgcagGTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCACTAATACAACAGAATGCTCCAAACCCATTTTCGACAAGCAATCCATTTTC
ttctttg CT-rich tract
atgtacttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctatcccctttattaattatttattatattattgctaggtttctttggtccatgtactttttttttgtgaaacatgtgcatcattctttggacatgcagGTGGACCAAACACTTCTGGAACTCAAGCAGTGGCACCTAGCTTTCCGTCACTAATACAACAGAATGCTCCAAACCCATTTTCGACAAGCAATCCATTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - -tgctagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatc