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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttttacaattgcattgctgctattagaattttgtttgattgtttgtaaaactgaacatttgtttattttagATCTTCAATGGCGTGTTCCTCAAAGTCAACAAGGCGACTATTGACATGCTACGCAGGGTTGATCCATATGATGCATATGG

Basic information

species Zea mays
transcript GRMZM2G344279_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G344279_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 4
--------------gtatgtttttacaattgcattgctgctattagaattttgtttgattgtttgtaaaactgaacatttgtttattttagATCTTCAATGGCGTGTTCCTCAAAGTCAACAAGGCGACTATTGACATGCTACGCAGGGTTGATCCATATGATGCATATGG
                 | || ||| || ||| |     || |  | |   || |  |||   | |     | |   |||| ||  |  ||||||||||||| || |||||||| || |||||||| || ||| ||||||| ||||||||||| ||||||| |||||||||
gttggtttatgaaccagttttcttagaaatgcgtgaactct-tgcgtacgctggtgtattaactttgtgcttaattgtttgatt-ctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTGCGCAGGGTTGAGCCATATGTTGCATATGG

upper sequence: GRMZM2G344279_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g51630.3 (Oryza sativa), 3'ss of exon 3
----gtatg-tttttacaattgcattgctgc---tattagaattttgtttgattgtttgtaaa-actgaacatttgtttatttt--agATCTTCAATGGCGTGTTCCTCAAAGTCAACAAGGCGACTATTGACATGCTACGCAGGGTTGATCCATATGATGCATATGG
    || || |||| |||||    |   |||   | ||  |||| || |  | |  |   ||     ||| |  |||| |||||  ||||||| ||||| |||||| | || |||||||| || || ||| ||||||| ||||||||||| ||||||| |||||||||
gtgggtgtggttttcacaatcatttgaatgcacgtgttgaaattatgatatagtactgtcaattgaggaaaaaatgttaattttgcagATCTTTAATGGAGTGTTCTTGAAGGTCAACAAAGCCACCATTAACATGCTGCGCAGGGTTGAGCCATATGTTGCATATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctattagaattttgtttgattgtttgtaaaactgaacatttgtttattttagATCTTCAATGGCGTGTTCCTCAAAGTCAACAAGGCGACTATTGACATGCTACGCAGGGTTGATCCATATGATGCATATGG
                gtttgat  putative branch site (score: 5)
                                             tttatttt  putative PPT
                                     aacatttgtttatttt  TA-rich tract