Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccatttccttttatcaatttgtcacatactgccacatctgtagtttctaacatcaatgcgtaaaaaattgaatcccatgaacagATCGAGACAATGTTCGAGAAATATAACTTTGCTGGGGTCTTCATCCAGATCCAAGCAGTTCTTTCACTGTATGCTCAAG

Basic information

species Zea mays
transcript GRMZM2G342386_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G342386_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g28190.1 (Oryza sativa), 3'ss of exon 4
gtatgccatttccttttatcaatttgtcacatactgccacatctgtagtttctaacatcaatgcgtaaaaaattgaatcccatga---acagATCGAGACAATGTTCGAGAAATATAACTTTGCTGGGGTCTTCATCCAGATCCAAGCAGTTCTTTCACTGTATGCTCAAG
||| |   ||| ||   |||    |||    ||||   | || |||  |||   | |||| |   ||  ||||||||||| | ||   | |||| ||||||||||| |||||||| |||||||||||||| ||||||||| ||||||| |||||||| || ||||||||||
gtaggttgttttctcccatctggctgttctgtactatgaaatttgttttttaagatatcactaactagcaaattgaatcctacgataaatagATTGAGACAATGTTTGAGAAATACAACTTTGCTGGGGTATTCATCCAGGTCCAAGCTGTTCTTTCGCTATATGCTCAAG

upper sequence: GRMZM2G342386_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT3G27000.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgccatttccttttatcaatttgtcacatactgccacatctgtagtttctaacatcaatgcgtaaaaaattgaatcccatgaa-cagATCGAGACAATGTTCGAGAAATATAACTTTGCTGGGGTCTTCATCCAGATCCAAGCAGTTCTTTCACTGTATGCTCAAG
        |    | ||||||| |  |    ||        | ||  | || |   | || ||  | |    ||  ||   || || ||||| ||||||||||| |||||||| || || ||||| || ||||| || |||||||| ||| |  | || ||||||||||
-------gtaagatattatcaagtctttggttaagagttgctttgatggttgttggagcagtgattta----ttttatgttataaaacagATTGAGACAATGTTTGAGAAATACAATTTCGCTGGCGTTTTCATTCAAATCCAAGCCGTTTTGACTCTCTATGCTCAAG

upper sequence: GRMZM2G342386_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv14s0068g01630.t01 (Vitis vinifera), 3'ss of exon 4
----gtatgccatttcc-------ttttatca--atttgtcacatactgccac----atctgtagtttcta-acatca-atgcgtaaaaaattgaatccca--tga----acagATCGAGACAATGTTCGAGAAATATAACTTTGCTGGGGTCTTCATCCAGATCCAAGCAGTTCTTTCACTGTATGCTCAAG
    ||   ||| |||        |||| | |  || |||| || | |   ||    || |  | || ||| | ||    | | |  ||  |||| |   |  |||    |||| | ||||| ||||| |||||||| ||||||||||| || ||||| || |||||||| ||| |  || ||||||||||||
gtttgtgatccacttcaaaaataattttgttataatgtgtcccaaattatgactgctattttcaattactatatattttgtccctttaagtttgagtttgacttgacattacagGTTGAGACCATGTTTGAGAAATACAACTTTGCTGGTGTGTTCATTCAAATCCAAGCTGTTTTAACATTGTATGCTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccacatctgtagtttctaacatcaatgcgtaaaaaattgaatcccatgaacagATCGAGACAATGTTCGAGAAATATAACTTTGCTGGGGTCTTCATCCAGATCCAAGCAGTTCTTTCACTGTATGCTCAAG
               ttctaac  putative branch site (score: 1)
                               taaaaaattgaat  TA-rich tract