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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtatcggcttcatttagatcattaaattttctgcatatggtctctcaaaattacttatgtgatccatgtattactgctatcatcatctttatgcattattttgaactgtaagagttatatttatgtatcttatcctcatatttagGCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGACGGAGAGGTTGAATCATTTTGTTTTAACTGATTCCGATATAGCAGTGGTTGATGATCTTGGAC

Basic information

species Zea mays
transcript GRMZM2G342254_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G342254_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os06g37430.1 (Oryza sativa), 3'ss of exon 3
gtaagtgtatcggcttcatttagatcattaaattttctgcatatggtctctcaaaattacttatgtgatc--catgtattactgctatcatcatctttatgcattattttgaactgtaagagttatatttatgtatcttatcctcatatttagGCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGACGGAGAGGTTGAATCATTTTGTTTTAACTGATTCCGATATAGCAGTGGTTGATGATCTTGGAC
                                               |  || |  |   | | |  |||   ||| |||  |  | || | | || || |  |  ||||    | |     |   | || ||| | || |||  || || |||| |||||||||||||  |||| |||  |||| |    |||     | |||||| |  |||| |||||||| |||||||||||||||  |||||||||||
-----------------------------------------------cattctacttctatcaggccatctttatgcatttattttttcttgagctctaagtttcttttt----tctggagctctaagttttgtgtattgtcc--atgttcagGCCTTTCTGGAGCAAAGACTTGAGGAGCTTGAGACAGTGGAAGATATAAATCATCTAATTTTCACTGATTCTGATATAGCAGTGGTTACTGATCTTGGAC

upper sequence: GRMZM2G342254_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA06G42210.1 (Glycine max), 3'ss of exon 2
gtaagtgtatcggcttcatttagatcattaaattttctgcatatggtctctcaaaattacttatgtgatccatgtattactgctatcatcatctttatgcattattttgaactgtaagagttatatttatgtatcttatcctcatatttagGCATTTCTGGAGCAAAAGCTTGTGGAATTT------GATAGGACGGAGAGGTTGAATCATTTTGTTTTAACTGATTCCGATATAGCAGTGGTTGATGATCTTGGAC----
                                                        ||  || | | ||  ||   | |  |   | |  || || |      | ||| || | |   |  || ||     ||| || ||||  | |  || | ||| | ||   || |||   | |  ||       | | | |  | |   | | |||||   | || |||||||| ||||||||||||||||||||| | || |    
------------------------------------------------------ttttttttttatcatt-ataggtgatggtgtttagaattttaa------aattttaattctttaaactaaataaccttatgttttccttctttacagacctttttagAAACAAGGCTCCAGAATCTTTCTCAGAAGAAGCCAAAAAATATCACTCATTACATCTTCACTGATTCTGATATAGCAGTGGTTGATGATTTAGGGCAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcattattttgaactgtaagagttatatttatgtatcttatcctcatatttagGCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGACGGAGAGGTTGAATCATTTTGTTTTAACTGATTCCGATATAGCAGTGGTTGATGATCTTGGAC
                                     tcttatcctc  CT-rich tract
                      agttatatttatgtat  TA-rich tract