1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgtgatacggataggcaaattccatctaaccctttctccttggtctgtggtgctaaagattgaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTGTTATTTCAGAGACCGGATTCATTCTAAAGGAAGATGAAGACAACTTGG
species | Zea mays |
transcript | GRMZM2G341404_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|149079408|gb|EE168385.2|EE168385
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|148970832|gb|EE021601.2|EE021601
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|78080724|gb|DV509136.1|DV509136
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|71323581|gb|DR798459.1|DR798459
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|87155508|gb|DY400297.1|DY400297
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|78104565|gb|DV522983.1|DV522983
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|211247228|gb|FL156668.1|FL156668
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|91875154|gb|EB405111.1|EB405111
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|149010182|gb|EE041997.2|EE041997
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|148960799|gb|EE011462.2|EE011462
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|211245008|gb|FL156664.1|FL156664
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTNGAA-GACTACTNCA-EST: gi|26558848|gb|CA831083.1|CA831083
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACT-GAAAGACTACT-CAA
EST: CGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|101391578|gb|EB817725.1|EB817725
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTNAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTEST: gi|67016841|gb|CO445590.1|CO445590
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|22546040|gb|BU098361.1|BU098361
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTEST: gi|148940390|gb|EC885183.2|EC885183
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
EST: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAG GCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
genomic: TGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgatacg ... gaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGT
aaattccatctaaccctttctccttggtctgtggtgctaaagattgaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTGTTATTTCAGAGACCGGATTCATTCTAAAGGAAGATGAAGACAACTTGG
tgctaaa putative branch site (score: 200)
taaagattgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgatacggataggcaaattccatctaaccctttctccttggtctgtggtgctaaagattgaatttgcagGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTACTCAAGTGTTATTTCAGAGACCGGATTCATTCTAAAGGAAGATGAAGACAACTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA