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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgcgacaaatttggttaacgttgccttttaaggttcaattcatttcagcagtgatgcttttttagctgattgtttactcattgttccacagAATCTTTGGAGTCGTGTCCTTCCGAGGAGATATTTCTCTTAAGGCTCTTGAAGACAAACAACATCAGAGATAATAGTGACACTAGCTTGTTGAAATTTGT

Basic information

species Zea mays
transcript GRMZM2G341271_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G341271_T05 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os10g41590.1 (Oryza sativa), 3'ss of exon 3
----gttgcg-acaaatttggttaacgttgccttttaaggttcaattcatttcagcagtgatgcttttttagctgattgtttactcattgttccacagAATCTTTGGAGTCGTGTCCTTCCGAGGAGATATTTCTCTTAAGGCTCTTGAAGACAAACAACATCAGAGATAATAGTGACACTAGCTTGTTGAAATTTGT
    | | |      | ||| || || ||||  | | |||||   ||   ||   ||||  ||   ||      || | ||   ||  | |||| |||||||| | ||||| |||||||| ||||||||||||||||| || ||||||||  | |  ||  ||||| |||||  ||||| |||| |||  ||||| ||
gttggctacttggctacttgttttactttgctctctgaggtttgtttttcttt--cagtactgtcatt------gactattctttctctattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGAATTCCAGGAATTTCAGAAATAATGATGACAGTAGCCTGTCAAAATTAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcatttcagcagtgatgcttttttagctgattgtttactcattgttccacagAATCTTTGGAGTCGTGTCCTTCCGAGGAGATATTTCTCTTAAGGCTCTTGAAGACAAACAACATCAGAGATAATAGTGACACTAGCTTGTTGAAATTTGT
                           agctgat  putative branch site (score: 4)
                                            ttgttcc  putative PPT
                     tttttta  TA-rich tract