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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatctatttaacaaatattcttttgaatcttgattggtcatgcttaatgtactaaagttgtttgtcgtttgtgtatacctctctctctagacagatagattactgtttgttatcttttgttgtatttggcactcatttgcagtgtagtggtcagggaagacaaaaggctgctgaccgtcctttttccagATGGCCGTGATGGTCGCGCCTTTACCTTGAAGTACACATGCTTACCTTTCTCCTAAACAGTTTGGTGCACTCGAGTGAGCCCAAAAG

Basic information

species Zea mays
transcript GRMZM2G340359_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G340359_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g46450.1 (Oryza sativa), 3'ss of exon 4
gtatgtatctat--ttaacaaatattcttttgaatcttgattggtcatgcttaatgtactaaagttgtttgtcgtttg-tgtatacctctctctctagacagatagattactgtttgttatct---tttgttgtat------------ttggca------ctcatttgcagtgtagtggtcagggaagacaaaaggctgctgaccgtcctttttccagATGGCCGTGATGGTCGCGCCTTTACCTTGAAGTACACATGCTTACCTTTCTCCTAAACAGTTTGGTGCACTCGAGTGAGCCCAAAAG
|| ||||||| |  |||  |  ||||  |||| |  || |||    | | ||| | || || | || | |    |||| || |||| |||    | |   |  |||   |||| ||  | | |   ||   || ||             |  ||      ||||||  |||||||||||||||||||||||| |   || | || ||||||||||||||||| ||||| || || || ||||||||||||                                                       
gtttgtatctttcattattatttatttatttgcagttttattca--aagtttactttattagatttttatcaaatttgctgcatacttcttagacaaatgatttagggcactgcttcctttttggtttaactgcataataatgttaaactaacaatttatctcattcacagTGTAGTGGTCAGGGAAGACAAGAAATTGTTAACTGTCCTTTTTCCAGATGGTCGTGACGGCCGTGCTTTTACCTTGAAG-------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgcagtgtagtggtcagggaagacaaaaggctgctgaccgtcctttttccagATGGCCGTGATGGTCGCGCCTTTACCTTGAAGTACACATGCTTACCTTTCTCCTAAACAGTTTGGTGCACTCGAGTGAGCCCAAAAG
                                  tgctgac  putative branch site (score: 2)
                                        ccgtcctttttcc  CT-rich tract
                                              ttttt  TA-rich tract