1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagcgtttgcttctttctttttttctctctctctctctctcgtttgtttgttcctgaacatcagaaacagcagcagcatgacagattgacagtgagtactgaaacggccggtggtgcctctctgtggcgttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACAACGCGGTCCTCGGCCGGCTGAAGCAGTTCAGGGCCATGAACCAGTTCAA
species | Zea mays |
transcript | GRMZM2G340224_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGCATACGACGTCCTCA ACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACAEST: gi|50324131|gb|CO519257.1|CO519257
genomic: CTGCATACGACGTCCTCAgtgagcgttt ... gttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
EST: GATGCTCAACCCTGACCCCAAGCAGCGGATTTCTGCATACGACGTCCTCA ACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACAEST: gi|21480881|gb|BQ577564.1|BQ577564
genomic: GATGCTCAACCCTGACCCCAAGCAGCGGATTTCTGCATACGACGTCCTCAgtgagcgttt ... gttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
EST: CTGCATACGACGTCCTCA ACCATCCG-GGATC-AGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACAEST: gi|21390432|gb|BQ528481.1|BQ528481
genomic: CTGCATACGACGTCCTCAgtgagcgttt ... gttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
EST: CTGCATACGACGTCCTCA ACCATCCG-GGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACAEST: gi|87154477|gb|DY399266.1|DY399266
genomic: CTGCATACGACGTCCTCAgtgagcgttt ... gttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
EST: CTGCATACGACGTCCTCA ACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACAEST: gi|21330105|gb|BQ485486.1|BQ485486
genomic: CTGCATACGACGTCCTCAgtgagcgttt ... gttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
EST: CTGCATACGACGTCCTCA ACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
genomic: CTGCATACGACGTCCTCAgtgagcgttt ... gttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
gattgacagtgagtactgaaacggccggtggtgcctctctgtggcgttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACAACGCGGTCCTCGGCCGGCTGAAGCAGTTCAGGGCCATGAACCAGTTCAA
gattgac putative branch site (score: 28)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgtttgcttctttctttttttctctctctctctctctcgtttgtttgttcctgaacatcagaaacagcagcagcatgacagattgacagtgagtactgaaacggccggtggtgcctctctgtggcgttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACAACGCGGTCCTCGGCCGGCTGAAGCAGTTCAGGGCCATGAACCAGTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC