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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtaatgcctattttttacttcatctgtttcctgcctaaaaaatataagtttctctacaccgattgtttacagatataataaaggcaactccattacagTGAGCCCTAGGTCACAGGTGTCTAGGACAAGCAGCGGAGCGGCAGCTGGTTCCTCTGAAAGCAGAGGCACTGATGACAGCACAAAGCGACGAAAGTTGTC

Basic information

species Zea mays
transcript GRMZM2G337819_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G337819_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g62810.1 (Oryza sativa), 3'ss of exon 4
gtggtaatgcctattttttacttcatctgtttcctgcctaaaaaatataagtttctctacaccgattgtttacagatataataaaggcaactccattacagTGAGCCCTAGGTCACAGGTGTCTAGGACAAGCAGCGGAGCGGCAGCTGGTTCCTCTGAAAGCAGAGGCACTGATGACAGCACAAAGCGACGAAAGTTGTC
   || |||  || |   ||| |  | |  ||  |||||||||| |||||| ||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||| ||||| | |||||||| ||||| |||||||| ||||| ||| |||||| ||||||
---gtgatgattactgcctaccttgtttcatttgtgcctaaaaagtataagcttctctacatcaattgttttcagatataacaaaggcaactccattacagTGAGCCCCAGGTCGCAGGTGTCTAGGACAAGTAGCGGAGCAGCATCTGGTCCTTCTGAAAGTAGAGGTACTGATGATAGCACGAAGAGACGAAGGTTGTC

upper sequence: GRMZM2G337819_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g62810.3 (Oryza sativa), 3'ss of exon 1
gtggtaatgcctattttttacttcatctgtttcctgcctaaaaaatataagtttctctacaccgattgtttacagatataataaaggcaactccattacagTGAGCCCTAGGTCACAGGTGTCTAGGACAAGCAGCGGAGCGGCAGCTGGTTCCTCTGAAAGCAGAGGCACTGATGACAGCACAAAGCGACGAAAGTTGTC
||||| |||  || |   ||| |  | |  ||  |||||||||| |||||| ||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||| ||||| | |||||||| ||||| |||||||| ||||| ||| |||||| ||||||
gtggtgatgattactgcctaccttgtttcatttgtgcctaaaaagtataagcttctctacatcaattgttttcagatataacaaaggcaactccattacagTGAGCCCCAGGTCGCAGGTGTCTAGGACAAGTAGCGGAGCAGCATCTGGTCCTTCTGAAAGTAGAGGTACTGATGATAGCACGAAGAGACGAAGGTTGTC

upper sequence: GRMZM2G337819_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g62810.4 (Oryza sativa), 3'ss of exon 3
gtggtaatgcctattttttacttcatctgtttcctgcctaaaaaatataagtttctctacaccgattgtttacagatataataaaggcaactccattacagTGAGCCCTAGGTCACAGGTGTCTAGGACAAGCAGCGGAGCGGCAGCTGGTTCCTCTGAAAGCAGAGGCACTGATGACAGCACAAAGCGACGAAAGTTGTC
||||| |||  || |   ||| |  | |  ||  |||||||||| |||||| ||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||| ||||| | |||||||| ||||| ||||||                          
gtggtgatgattactgcctaccttgtttcatttgtgcctaaaaagtataagcttctctacatcaattgttttcagATATAACAAAGGCAACTCCATTACAGTGAGCCCCAGGTCGCAGGTGTCTAGGACAAGTAGCGGAGCAGCATCTGGTCCTTCTGAAAGTAGAGGTACTGAT--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211521869|gb|FK965545.1|FK965545
EST:     TGGAACCATGGAAAAGGATGAAAGGCAAATGGCAATGGCCACTGACCAAG                         TGAGCCCTAGGTCACAGGTGTCTAGGACAAGCAGCGGASSN-CAGCTGGTT
genomic: TGGAACCATGGAAAAGGATGAAAGGCAAATGGCAATGGCCACTGACCAAGgtggtaatgc ... tccattacagTGAGCCCTAGGTCACAGGTGTCTAGGACAAGCAGCGGAGCGGCAGCTGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagtttctctacaccgattgtttacagatataataaaggcaactccattacagTGAGCCCTAGGTCACAGGTGTCTAGGACAAGCAGCGGAGCGGCAGCTGGTTCCTCTGAAAGCAGAGGCACTGATGACAGCACAAAGCGACGAAAGTTGTC
                                            ctccatt  CT-rich tract
                  attgtttacagatata  TA-rich tract