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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacatcgttctctctcggtctatctttgcagttttgattaatttccaaatagaaatagctatgttcttgagcatctctctttatatttctctcgttgatgatgctggttgcttctctcgatctgaccccatcttattgttggatgaattccttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG

Basic information

species Zea mays
transcript GRMZM2G334225_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71771389|gb|DR969326.1|DR969326
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|211397005|gb|FL238530.1|FL238530
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|211397006|gb|FL238531.1|FL238531
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|211397001|gb|FL238526.1|FL238526
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|211520163|gb|FL238537.1|FL238537
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|211397002|gb|FL238527.1|FL238527
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|74233594|gb|DT641508.1|DT641508
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|211520159|gb|FL238533.1|FL238533
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|211520162|gb|FL238536.1|FL238536
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|211397004|gb|FL238529.1|FL238529
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|211397003|gb|FL238528.1|FL238528
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|211520161|gb|FL238535.1|FL238535
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|50333189|gb|CO528315.1|CO528315
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
EST: gi|211520160|gb|FL238534.1|FL238534
EST:     CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAA                         TAAAGAGCCAATAAATTCCAACGTAGAG
genomic: CTTGCTAAACTCAAATGTGAGGGTAACATAGCCGAACAACTCACACCTAAgtacgtacat ... cttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttgcttctctcgatctgaccccatcttattgttggatgaattccttggaacagTAAAGAGCCAATAAATTCCAACGTAGAG
              atctgac  putative branch site (score: 3)
                                          ttcctt  putative PPT
                        atcttatt  TA-rich tract