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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcacacaatttttttgatataaaaattcatgtttatgtgtcagccaatgataactcaggtcaccgcttgtttttttttgcctcacagGCTTTTCTTACAAATGCAAAAGGATATCCTTGTTTATCAAAGCGCCATCATAGTCTGCTAACTGGATTTTTTAAACATTCTATTCAGGTTTGTTATTTTT

Basic information

species Zea mays
transcript GRMZM2G331932_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G331932_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g04660.1 (Oryza sativa), 3'ss of exon 6
gtaatcacacaatttttttgatataaaaattcatgt-------ttatgtgtcagccaatgataac---tcaggtcaccgcttgtt-----tttttttgcctcacagGCTTTTCTTACAAATGCAAAAGGATATCCTTGTTTATCAAAGCGCCATCATAGTCTGCTAACTGGATTTTTTAAACATTCTATTCAGGTTTGTTATTTTT
||||    || | || ||  ||  || |   ||||        ||   |   ||  ||  |||||   ||| |   | | |   |      ||||| | ||| ||||||||||| |||||||| | ||| ||||||||  | ||||||||||| || |  ||||| |||||||||||||| |||||  |||||             
gtaactgtactacttattcaattaaagatgacatgcgatctcctttctttggagataagaataacccttcatggttctgatcactaaacgatttttcgtctcccagGCTTTTCTGACAAATGCCAGAGGTTATCCTTGCCTGTCAAAGCGCCACCAGAAGCTGCTTACTGGATTTTTTAACCATTCGGTTCAG-------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgtgtcagccaatgataactcaggtcaccgcttgtttttttttgcctcacagGCTTTTCTTACAAATGCAAAAGGATATCCTTGTTTATCAAAGCGCCATCATAGTCTGCTAACTGGATTTTTTAAACATTCTATTCAGGTTTGTTATTTTT
               tgataac  putative branch site (score: 2)
                              ccgcttgttttttttt  putative PPT
                                  ttgttttttttt  TA-rich tract