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gtcagtagttgtttattctagaagatttaaccttcgtctgaaatatatatgcactcttttggaaatacctctatgcttaacgttagacgcaataattcttttttcacagCAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTCGTCAGGCGAAGACAAAAGTTGATGAATTGGAAAAAGAC
species | Zea mays |
transcript | GRMZM2G330772_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTGCAAATGAGGAATCCAAAGCAGTTACAAAAGCAAGTTCCATGAAAG CAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTCEST: gi|60359751|gb|DN226724.1|DN226724
genomic: ACTGCAAATGAGGAATCCAAAGCAGTTACAAAAGCAAGTTCCATGAAAGgtcagtagtt ... tttttcacagCAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTC
EST: ACTGCAAATGAGGAATCCAAAGCAGTTACAAAAGCAAGTTCCATGAAAG CAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTCEST: gi|211272674|gb|FL118187.1|FL118187
genomic: ACTGCAAATGAGGAATCCAAAGCAGTTACAAAAGCAAGTTCCATGAAAGgtcagtagtt ... tttttcacagCAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTC
EST: ACTGCAAATGAGGAATCCAAAGCAGTTACAAAAGCAAGTTCCATGAAAG CAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTCEST: gi|211425646|gb|FL363236.1|FL363236
genomic: ACTGCAAATGAGGAATCCAAAGCAGTTACAAAAGCAAGTTCCATGAAAGgtcagtagtt ... tttttcacagCAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTC
EST: ACTGCAAATGAGGAATCCAAAGCAGTTACAAAAGCAAGTTCCATGAAAG CAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTCEST: gi|211262997|gb|FL346818.1|FL346818
genomic: ACTGCAAATGAGGAATCCAAAGCAGTTACAAAAGCAAGTTCCATGAAAGgtcagtagtt ... tttttcacagCAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTC
EST: ACTGCAAATGAGGAATCCAAAGCAGTTACAAAAGCAAGTTCCATGAAAG CAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTCEST: gi|211531082|gb|FL312439.1|FL312439
genomic: ACTGCAAATGAGGAATCCAAAGCAGTTACAAAAGCAAGTTCCATGAAAGgtcagtagtt ... tttttcacagCAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTC
EST: ACTGCAAATGAGGAATCCAAAGCAGTTACAAAAGCAAGTTCCATGAAAG CAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTC
genomic: ACTGCAAATGAGGAATCCAAAGCAGTTACAAAAGCAAGTTCCATGAAAGgtcagtagtt ... tttttcacagCAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTC
tcttttggaaatacctctatgcttaacgttagacgcaataattcttttttcacagCAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTCGTCAGGCGAAGACAAAAGTTGATGAATTGGAAAAAGAC
gcttaac putative branch site (score: 3)
ttcttttttcac putative PPT
aataattcttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtagttgtttattctagaagatttaaccttcgtctgaaatatatatgcactcttttggaaatacctctatgcttaacgttagacgcaataattcttttttcacagCAATTAAGCAGCGGATGGAGAAAGATATTGATGAAGTGGGGAAAATTGCTCGTCAGGCGAAGACAAAAGTTGATGAATTGGAAAAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA