1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcaaaccatctttgagaaattttaagacttaaatttggtcaatcattaaccatgatgctgtttgtatcaccccccttcaatgattgcattggaaatgcagGTCCTGTTTCTGCAATGGTTGGGAACAGGCTAGAAAGCAGACCTATTTCGGCATCACCATCCTTCAGCTCAAGTTTGGTGGCATATAAAGGATCTGCCAA
species | Zea mays |
transcript | GRMZM2G330298_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAACCACATCCATTTAACTGAAGCGTCACTTGTGCCAACAAAACCTACAG GTCCTGTTTCTGCAATGGTTGGGAACAGGCTAGAAAGCAGACCTATTTCGGEST: gi|211520165|gb|FL238539.1|FL238539
genomic: AAACCACATCCATTTAACTGAAGCGTCACTTGTGCCAACAAAACCTACAGgtagcgagac ... ggaaatgcagGTCCTGTTTCTGCAATGGTTGGGAACAGGCTAGAAAGCAGACCTATTTCGG
EST: AAACCACATCCATTTAACTGAAGCGTCACTTGTGCCAACAAAACCTACAG GTCCTGTTTCTGCAATGGTTGGGAACAGGCTAGAAAGCAGACCTATTTCGGEST: gi|211520166|gb|FL238540.1|FL238540
genomic: AAACCACATCCATTTAACTGAAGCGTCACTTGTGCCAACAAAACCTACAGgtagcgagac ... ggaaatgcagGTCCTGTTTCTGCAATGGTTGGGAACAGGCTAGAAAGCAGACCTATTTCGG
EST: AAACCACATCCATTTAACTGAAGCGTCACTTGTGCCAACAAAACCTACAG GTCCTGTTTCTGCAATGGTTGGGAACAGGCTAGAAAGCAGACCTATTTCGG
genomic: AAACCACATCCATTTAACTGAAGCGTCACTTGTGCCAACAAAACCTACAGgtagcgagac ... ggaaatgcagGTCCTGTTTCTGCAATGGTTGGGAACAGGCTAGAAAGCAGACCTATTTCGG
ttaaccatgatgctgtttgtatcaccccccttcaatgattgcattggaaatgcagGTCCTGTTTCTGCAATGGTTGGGAACAGGCTAGAAAGCAGACCTATTTCGGCATCACCATCCTTCAGCTCAAGTTTGGTGGCATATAAAGGATCTGCCAA
cattaac putative branch site (score: 14)
tttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaaccatctttgagaaattttaagacttaaatttggtcaatcattaaccatgatgctgtttgtatcaccccccttcaatgattgcattggaaatgcagGTCCTGTTTCTGCAATGGTTGGGAACAGGCTAGAAAGCAGACCTATTTCGGCATCACCATCCTTCAGCTCAAGTTTGGTGGCATATAAAGGATCTGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-caaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - -gatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgc