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...cagtgattttctcggttgggaccatgtttcggtctcttaatataatactaggagggcggtctttccctccccagctgagttttttacatgactttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATTTTGCACTGCGTGAAAGGGAGGGAAATGCTAAAGCTTTTTTCCGACAAG
species | Zea mays |
transcript | GRMZM2G329306_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCC GCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATEST: gi|32930877|gb|CF035689.1|CF035689
genomic: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAT
EST: AGAGCGCAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCC GCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATEST: gi|113703884|gb|EE681388.1|EE681388
genomic: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAT
EST: GGAAGACCAAGTCAATAATACTCACTAATAGCTCC GCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATEST: gi|78124365|gb|DV542749.1|DV542749
genomic: GGAAGACCAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAT
EST: CAAGTCAATAATACTCACTAATAGCTCC GCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATEST: gi|32794497|gb|CD946733.1|CD946733
genomic: CAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAT
EST: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCC GCATGCAAATTAEST: gi|71443878|gb|DR824928.1|DR824928
genomic: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATGCAAATTA
EST: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCC GCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATEST: gi|60350322|gb|DN217295.1|DN217295
genomic: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAT
EST: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCC GCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATEST: gi|32930670|gb|CF035482.1|CF035482
genomic: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAT
EST: AGAGCTCAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCC GCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATEST: gi|88756259|gb|DY540400.1|DY540400
genomic: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAT
EST: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCC GCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATEST: gi|32865832|gb|CF005514.1|CF005514
genomic: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAT
EST: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCC GCATGGCAA-TTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAEST: gi|76017867|gb|DT945037.1|DT945037
genomic: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATG-CAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGA
EST: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCC GCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATEST: gi|32930642|gb|CF035454.1|CF035454
genomic: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAT
EST: AGAGCNCAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCC GCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATEST: gi|149012518|gb|EE042586.2|EE042586
genomic: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAT
EST: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCC GCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAT
genomic: AGAGCACAGCACTGCGGAAGACCAAGTCAATAATACTCACTAATAGCTCCgtatgttcgc ... actttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGAT
tactaggagggcggtctttccctccccagctgagttttttacatgactttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATTTTGCACTGCGTGAAAGGGAGGGAAATGCTAAAGCTTTTTTCCGACAAG
ctttttc CT-rich tract
ttttttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtgattttctcggttgggaccatgtttcggtctcttaatataatactaggagggcggtctttccctccccagctgagttttttacatgactttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATTTTGCACTGCGTGAAAGGGAGGGAAATGCTAAAGCTTTTTTCCGACAAG
- - - - - - - - - - - -atgtttc
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