Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atagacctgacaggttgacatcaacgtgcaaaccggagctgtgtgttcttatattgctaattaaagaaagctgattgcattctaaactcgggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCTAGCAAGCCTGGTTTGTTTGGGTCATCAAGGATCAAATGGAACTTTACCA

Basic information

species Zea mays
transcript GRMZM2G329144_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G329144_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g24380.1 (Oryza sativa), 3'ss of exon 4
---atagacctgacaggttgacatcaacgtgcaaaccggagctgtgtgttcttatattgctaattaaagaaagctgattgcattctaaactcgggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCTAGCAAGCCTGGTTTGTTTGGGTCATCAAGGATCAAATGGAACTTTACCA---
     |  | | |||     | | |||  | | |   |  | | | | |   | ||||  |  ||  |    |||  ||   ||  ||| |  |  | |||||||||| ||||| || || ||||| || ||  ||||||| ||| ||||||||||||||||||| ||||||||   ||| || ||||| |||||||||||||   
cttgcaatcattacatagccataacaat-tacgacatgtggatttatttaactttatt--ttgttggaagccgctagttatttttcaaattttgtatctgcagGTGCGTGTAAATGGTCCTGATGCTGCACCACTTTACAAATTTTTGAAAGCTAGCAAGCCTGGCTTGTTTGG---ATCTAGAATCAAGTGGAACTTTACCAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211496099|gb|FL377912.1|FL377912
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAA-GCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211131056|gb|FL391854.1|FL391854
EST:     AGACTTTGCTTGCACCAGATTTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AGACTTTGCTTGCACCAGATTT-AAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211501843|gb|FL388426.1|FL388426
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCCGCGCCGGTTTACAAGTTTCTGA
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGA
EST: gi|211500170|gb|FL426488.1|FL426488
EST:     AGACTTTGCTTGCACCAGGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAA
genomic: AGACTTTGCTTGCACCAG-ATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAA
EST: gi|211084683|gb|FL387358.1|FL387358
EST:     AGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCG
genomic: AGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTT-CAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCG
EST: gi|22545491|gb|BU097850.1|BU097850
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGGTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCG
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCG
EST: gi|14243063|gb|BG840760.2|BG840760
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211530013|gb|FL385894.1|FL385894
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCG
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCG
EST: gi|211520783|gb|FL373488.1|FL373488
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAGAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|28983489|gb|BQ538710.2|BQ538710
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTTTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|10191547|gb|BE761623.1|BE761623
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211225829|gb|FL402237.1|FL402237
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGG
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGG
EST: gi|211329903|gb|FL381786.1|FL381786
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211292210|gb|FL380933.1|FL380933
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211017372|gb|FL408588.1|FL408588
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|101391621|gb|EB817747.1|EB817747
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTT-CAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211470404|gb|FL454220.1|FL454220
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATMCCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGSCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211278589|gb|FL376801.1|FL376801
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAG
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAG
EST: gi|211060112|gb|FL393160.1|FL393160
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211009248|gb|FL416491.1|FL416491
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGGC
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAG-C
EST: gi|211530055|gb|FL388002.1|FL388002
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|13381984|gb|BG458659.1|BG458659
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211525016|gb|FL424286.1|FL424286
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211284108|gb|FL384407.1|FL384407
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCG
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCG
EST: gi|211214723|gb|FL394680.1|FL394680
EST:     AAGACTTTGCTTGCACCA--TTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|8367944|gb|BE050889.1|BE050889
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|87157407|gb|DY402196.1|DY402196
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211147264|gb|FL387786.1|FL387786
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|60356015|gb|DN222988.1|DN222988
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211337056|gb|FL419792.1|FL419792
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCG
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCG
EST: gi|67011682|gb|CO440431.1|CO440431
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|60358353|gb|DN225326.1|DN225326
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211518880|gb|FL413873.1|FL413873
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGG
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGG
EST: gi|211063314|gb|FL403455.1|FL403455
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|37379775|gb|CF626646.1|CF626646
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|116822363|gb|EC865760.1|EC865760
EST:     AGACTTTGCTTGCACCAGGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AGACTTTGCTTGCACCAG-ATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211429056|gb|FL404563.1|FL404563
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGA
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGA
EST: gi|37381108|gb|CF627414.1|CF627414
EST:     AAGACTTTGCTTGCACCAGATTTAATGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211065174|gb|FL369022.1|FL369022
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211451170|gb|FL456365.1|FL456365
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|18180377|gb|BM381587.1|BM381587
EST:     CAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: CAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211082960|gb|FL420013.1|FL420013
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACA
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACA
EST: gi|211007518|gb|FL457984.1|FL457984
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211496470|gb|FL394442.1|FL394442
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGAC
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGAC
EST: gi|211401198|gb|FL425445.1|FL425445
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|26558316|gb|CA830551.1|CA830551
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|32841499|gb|CD981180.1|CD981180
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|32846828|gb|CD986509.1|CD986509
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|13382326|gb|BG459001.1|BG459001
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|51592947|gb|CV072093.1|CV072093
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|47961660|gb|CN844369.1|CN844369
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|32919699|gb|CF024511.1|CF024511
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211341878|gb|FL422746.1|FL422746
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211209105|gb|FL370007.1|FL370007
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAA
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAA
EST: gi|61236533|gb|DN586283.1|DN586283
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|16379741|gb|BI993126.1|BI993126
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211506468|gb|FL386341.1|FL386341
EST:     AGACTTTGCTTGCACCAGATTTAAAGCTGGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGGTTTACAAGTTTCTGAAAGC
genomic: AGACTTTGCTTGCACCAGATTTAAAGCTG-AATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGG-TTTACAAGTTTCTGAAAGC
EST: gi|211455876|gb|FL373123.1|FL373123
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|9953562|gb|BE640145.1|BE640145
EST:     TTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: TTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|16926510|gb|BM079578.1|BM079578
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211221434|gb|FL386101.1|FL386101
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|16926216|gb|BM079284.1|BM079284
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211081760|gb|FL378025.1|FL378025
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCCGGTTTACAAG
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCC-GGTTTACAAG
EST: gi|211136736|gb|FL400349.1|FL400349
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211003170|gb|FL398082.1|FL398082
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211429343|gb|FL418455.1|FL418455
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211093343|gb|FL430023.1|FL430023
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGGTTTACAAGTTTCTGAAAAG
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGG-TTTACAAGTTTCTGAAA-G
EST: gi|211158277|gb|FL406080.1|FL406080
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211325357|gb|FL370094.1|FL370094
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGC
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGC
EST: gi|211045305|gb|FL393094.1|FL393094
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTTACAAGTTTCTGAAAGC
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTT-ACAAGTTTCTGAAAGC
EST: gi|13490714|gb|BG517478.1|BG517478
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211436512|gb|FL387571.1|FL387571
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGGCCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|10191601|gb|BE761677.1|BE761677
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|9953563|gb|BE640146.1|BE640146
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211516379|gb|FL408121.1|FL408121
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|60341752|gb|DN208725.1|DN208725
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211466205|gb|FL385417.1|FL385417
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGT
EST: gi|32830198|gb|CD969876.1|CD969876
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211408331|gb|FL399287.1|FL399287
EST:     AGACTTTGCTTGCACCAGATTTAAAGCTGNATACCCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGG
genomic: AGACTTTGCTTGCACCAGATTTAAAGCTGAATACCC-AGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGG
EST: gi|18180755|gb|BM381965.1|BM381965
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211439776|gb|FL418972.1|FL418972
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211317842|gb|FL424596.1|FL424596
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGA
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGA
EST: gi|211230691|gb|FL436009.1|FL436009
EST:     AGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
genomic: AGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCT
EST: gi|211146309|gb|FL420905.1|FL420905
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCCGCGCCGGTTTACAAG
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAG
EST: gi|211026994|gb|FL377496.1|FL377496
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAG
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAG
EST: gi|211227878|gb|FL402241.1|FL402241
EST:     AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAG                         GTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTAC
genomic: AAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 744

CCCTTGCAATCAGTTCTTGCGACAGGAGCCAGGTACTGATCAGCAGATACAAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCTAGCAAGCCTGGTTTGTTTGGGTCATCAAGGATCAAATGGAACTTTACCA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 625

CCCTTGCAATCAGTTCTTGCGACAGGAGCCAGGTACTGATCAGCAGATACAAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCTAGCAAGCCTGGTTTGTTTGGGTCATCAAGGATCAAATGGAACTTTACCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 503

CCCTTGCAATCAGTTCTTGCGACAGGAGCCAGGTACTGATCAGCAGATACAAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCTAGCAAGCCTGGTTTGTTTGGGTCATCAAGGATCAAATGGAACTTTACCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1173

CCCTTGCAATCAGTTCTTGCGACAGGAGCCAGGTACTGATCAGCAGATACAAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGgtgagaactg ... ggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCTAGCAAGCCTGGTTTGTTTGGGTCATCAAGGATCAAATGGAACTTTACCA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttatattgctaattaaagaaagctgattgcattctaaactcgggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCTAGCAAGCCTGGTTTGTTTGGGTCATCAAGGATCAAATGGAACTTTACCA
                                  ttctaaa  putative branch site (score: 1173)
     atattgctaattaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atagacctgacaggttgacatcaacgtgcaaaccggagctgtgtgttcttatattgctaattaaagaaagctgattgcattctaaactcgggttttgcagGTGCGCGTAAACGGACCAGATGCGGCGCCGGTTTACAAGTTTCTGAAAGCTAGCAAGCCTGGTTTGTTTGGGTCATCAAGGATCAAATGGAACTTTACCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - cgtgcaa
- - - - - - - - - - - - - - - - - ggagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattc