1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaggtggcgctactagtacatatacatgataatctccagtccagaatgaaatggaaccttaatttgaatatgaaacatcacttaattacctgaccgacttccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTGCCGTGCAGCTCGCCAACGCCCGCGACAAGCCATG
species | Zea mays |
transcript | GRMZM2G328908_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCCCAGGCCAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTEST: gi|7135782|gb|AW498263.1|AW498263
genomic: CCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTEST: gi|18650231|gb|BM499050.1|BM499050
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGAAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTEST: gi|4647713|gb|AI622788.1|AI622788
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTEST: gi|149040130|gb|EE046781.2|EE046781
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCTTCATCAACGATTCTGCGGGGGTGGTCGCGACCAATACCGCTEST: gi|16919363|gb|BM074154.1|BM074154
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTEST: gi|110219083|gb|EC900981.1|EC900981
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCCTCATCAACGATTCTGCCGGGGTGGTCGCGACCAATACCGCTEST: gi|71772626|gb|DR970554.1|DR970554
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: GACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTEST: gi|32849587|gb|CD989268.1|CD989268
genomic: GACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTEST: gi|116820958|gb|EC864226.1|EC864226
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTEST: gi|148934032|gb|EC878040.2|EC878040
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCTTCATCAACGATTCTGCCGGCGTCGTCGCGACCAATACCGCTEST: gi|13126121|gb|BG316691.1|BG316691
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTEST: gi|148996082|gb|EE035341.2|EE035341
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTEST: gi|13490410|gb|BG517174.1|BG517174
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGAAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTEST: gi|13126546|gb|BG317116.1|BG317116
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
EST: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
genomic: AGGAGGTGGGGGACGACACAAGCATCCTGTTCATCACCACCCCAGGCCAGgtaggtggcg ... tccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCT
aaccttaatttgaatatgaaacatcacttaattacctgaccgacttccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTGCCGTGCAGCTCGCCAACGCCCGCGACAAGCCATG
acctgac putative branch site (score: 62)
cttcc putative PPT
taatttgaatatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtggcgctactagtacatatacatgataatctccagtccagaatgaaatggaaccttaatttgaatatgaaacatcacttaattacctgaccgacttccaattaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACCAATACCGCTGCCGTGCAGCTCGCCAACGCCCGCGACAAGCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC