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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagtgacctagcatattatgtagtttgtcgtggaccttttattagtaaaataaagcacacatatttattttttaaaatataacagtcactgcagactatttcattgaccttttaccgtccttcattatctatgagttaatttgtgttgttatattgtatagATTGGGAAAGGTTCAAGAAGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG

Basic information

species Zea mays
transcript GRMZM2G328265_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G328265_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 3'ss of exon 3
gtgaagtgacctagcatattatgtagtttgtcgtggaccttttattagtaaaataaagcacacatatttattttttaaaatataacagtcactgcagactatttcattgaccttttaccgtccttcattatctatgagtt-aatttgtgttgttatattgtatagATTGGGAAAGGTTCAAGAAGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG
||||| | |||| |  |  | ||| | || | ||      ||||| |||||| | ||| ||            | |||| ||  | | |       || | ||| |||  | ||| |     ||| | ||||| || |||  || || |||   || |||  |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||
gtgaatttaccttg--tgatgtgttggttattgtta--tatttatcagtaaattgaagtac------------tgtaaactagtatattt------gaatgttt-attaccttttaataccgctttaatatctttgtgtttgatatgagttacaatgttgcgtagATTGGGAAAGGATCAAGAGGAGATGTTACTATATTGCCTACTCTTGTTGTGAACAATCGGCAATACCGAG

upper sequence: GRMZM2G328265_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA11G00370.1 (Glycine max), 3'ss of exon 3
gtgaagtgacctagcatattatgtagtttgtcgtggaccttttattagtaaaataaagcacacatatttattttttaaaatataacagtcactgcagactatttcattgaccttttaccgtccttcattatctatgagttaatttgtgttgttatattgtatagATTGGGAAAGGTTCAAGAAGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG
                                                                         | |   |  | | | |  ||    | |  |||||||      | | ||  |  ||        || |  ||     | |||  ||   |||||||| || || ||  || | |||||||| ||||||||||| |||||||| || || || ||||||||||
------------------------------------------------------------------------gtattgtactttataattgctattaattcattcattgcatcagtgcagtaatatat--------agatgtttaacaatattagttttggtagATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAG

upper sequence: GRMZM2G328265_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 3'ss of exon 3
gtgaagtgacctagcatattatgtagtttgtcgtggaccttttattagtaaaataaagcacacatatttattttttaaaatataacagtcactgcagactatttcattgaccttttaccgtccttcattatctatgagttaatttgtgttgttatattgtatagATTGGGAAAGGTTCAAGAAGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG
            ||||| |  | |    | |  |     |||||||       |  |||| ||   ||| || |||         | | |  |       |||   ||||  ||      | |    | |   |     |  ||         |  |  || || ||||||||||  ||||| | ||||| ||||||||||| || ||||||||||||||  | ||||||||||
---------gtaagcatctcttctt-catatattttttattttattgaagtgcttcagca-acccttttgttgtttgttgggcttctggcttttatacgcattgtcttgagattg-gttattccagttcaatcaaacactgtttgacaagaacacttcctacagGTTGGGAAAGGAACAAGAGGCGATGTCACTATATTGCCCACCCTTGTTGTGAACAATAGACAATATCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttttaccgtccttcattatctatgagttaatttgtgttgttatattgtatagATTGGGAAAGGTTCAAGAAGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG
                                       ttgttatattgtata  TA-rich tract