1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaactacaaaaactgtacgtaaccacacacatatatcttcctgttgaacgtaagctatgatttttgcacgggtgtgcctgcagGTACTGACCTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCTATGAAGGCTGCTTGACAAATTTTGAAATCGGCGACGATGGAGCAGACGC
species | Zea mays |
transcript | GRMZM2G326116_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTGGAGAAAATCCACATTCCTGCAGATGAATTCTTGGCTTCAATGAAAG GTACTGACTTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCTEST: gi|6918730|gb|AW400260.1|AW400260
genomic: TCTGGAGAAAATCCACATTCCTGCAGATGAATTCTTGGCTTCAATGAAAGgtaactacaa ... gtgcctgcagGTACTGACCTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCT
EST: TCTGGAGAAAATCCACATTCCTGCAGATGAATTCTTGGCTTCAATGAAAG GTACTGACTTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCTEST: gi|113704244|gb|EE681748.1|EE681748
genomic: TCTGGAGAAAATCCACATTCCTGCAGATGAATTCTTGGCTTCAATGAAAGgtaactacaa ... gtgcctgcagGTACTGACCTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCT
EST: TCTGGAGAAAATCCACATTCCTGCAGATGAATTCTTGGCTTCAATGAAAG GTACTGACCTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCTEST: gi|78179175|gb|DV549548.1|DV549548
genomic: TCTGGAGAAAATCCACATTCCTGCAGATGAATTCTTGGCTTCAATGAAAGgtaactacaa ... gtgcctgcagGTACTGACCTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCT
EST: TCTGGAGAAAATCCACATTCCTGCAGATGAATTCTTGGCTTCAATGAAAG GTACTGACTTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCTEST: gi|32919867|gb|CF024679.1|CF024679
genomic: TCTGGAGAAAATCCACATTCCTGCAGATGAATTCTTGGCTTCAATGAAAGgtaactacaa ... gtgcctgcagGTACTGACCTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCT
EST: TCTGGAGAAAATCCACATTCCTGCAGATGAATTCTTGGCTTCAATGAAAG GTACTGACCTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCT
genomic: TCTGGAGAAAATCCACATTCCTGCAGATGAATTCTTGGCTTCAATGAAAGgtaactacaa ... gtgcctgcagGTACTGACCTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCT
acatatatcttcctgttgaacgtaagctatgatttttgcacgggtgtgcctgcagGTACTGACCTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCTATGAAGGCTGCTTGACAAATTTTGAAATCGGCGACGATGGAGCAGACGC
tatgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactacaaaaactgtacgtaaccacacacatatatcttcctgttgaacgtaagctatgatttttgcacgggtgtgcctgcagGTACTGACCTGGCCAATCAAGCCGGAGTGGGACACTATTACCACATTTTCTATGAAGGCTGCTTGACAAATTTTGAAATCGGCGACGATGGAGCAGACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG