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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatttatattcataccaggtcgctagttttttaatggcctctgcttttgtccctcaaacatttatgacatgaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA

Basic information

species Zea mays
transcript GRMZM2G325131_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G325131_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g38950.1 (Oryza sativa), 3'ss of exon 5
gtaacatttatattcataccaggtcgcta----gttttttaatggcctctgcttttgtccc-tcaaacatttatgacatg-aatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA
|| | | |||  ||||||   ||| || |    | ||||  ||| |||||||| |   |      || |  |    |||| || || |||||||||||||||||||||||||||| || |||||||| |||||||||||||||   |||||||||||  |||| ||||| ||||||||||||||||||||
gttagacttactttcatattgggttgcaataatggttttccatgacctctgctatcaacttactgaaaaggtggttcatgtaaaattcagGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAATGGCTTGCCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16920775|gb|BM074824.1|BM074824
EST:     CATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: CATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|31354238|gb|CD438595.1|CD438595
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|44901120|gb|CK827665.1|CK827665
EST:     ATTTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         CAAAGATTATCCGTGCTCATTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: A-TTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|18163922|gb|BM333761.1|BM333761
EST:     AATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|5740708|gb|AI948398.1|AI948398
EST:     GGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: GGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33099441|gb|CF059401.1|CF059401
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|149102824|gb|EE288168.2|EE288168
EST:     TGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: TGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|6021279|gb|AW066207.1|AW066207
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGNGCTCCTTCTGGAATGATGCATGGGAAAAGCTCTCCA
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCA
EST: gi|18660207|gb|BM500741.1|BM500741
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33099920|gb|CF059880.1|CF059880
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33099846|gb|CF059806.1|CF059806
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|37389434|gb|CF631937.1|CF631937
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33099031|gb|CF058991.1|CF058991
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|211412147|gb|FL109911.1|FL109911
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|18173984|gb|BM349372.1|BM349372
EST:     TTTGC-TGGGTCTGC-ATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: TTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33099524|gb|CF059484.1|CF059484
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|18168211|gb|BM338057.1|BM338057
EST:     CAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: CAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33099508|gb|CF059468.1|CF059468
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|86469587|gb|DY235957.1|DY235957
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33100076|gb|CF060036.1|CF060036
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|110215812|gb|EC897710.1|EC897710
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|113701050|gb|EE678554.1|EE678554
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|44901121|gb|CK827666.1|CK827666
EST:     ATTTTTGGAG-TTGCCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: ATTTTTGGAGTTTG-CATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|211412146|gb|FL109910.1|FL109910
EST:     TTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: TTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33100338|gb|CF060298.1|CF060298
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTAAAGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33099759|gb|CF059719.1|CF059719
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33099556|gb|CF059516.1|CF059516
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttttaatggcctctgcttttgtccctcaaacatttatgacatgaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA
   ttttaat  putative branch site (score: 3)
                              aaacatttat  TA-rich tract