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gtgtgtcactgtcactcccggtggtgtttcaaaccttcttaccatcgatatatcatatatatatatatatatatatatgctgctatattcggttctgctctctgcagATCTTTGGGATTTACATGGTCAAAGACAAGGACAACGTGACCTTGGAGGATGTGCTGCAGCCTGGAACAAACATGCTTGCTGCTGGCTACTGCATGTACG
species | Zea mays |
transcript | GRMZM2G322953_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCCGCTGGATGGCTCCTCCAACATCGACTGTGGTGTCTCAATCGGAACG ATCTTTGGGATTTACATGGTCAAAGACAAGGACAEST: gi|211164074|gb|FL013512.1|FL013512
genomic: ACCCGCTGGATGGCTCCTCCAACATCGACTGTGGTGTCTCAATCGGAACGgtgtgtcact ... ctctctgcagATCTTTGGGATTTACATGGTCAAAGACAAGGACA
EST: ACCCGCTGGATGGCTCCTCCAACATCGACTGTGGTGTCTCAATCGGAACG ATCTTTGGGATTTACATGGTCAAAGACAAGGACAACGTGACCTTGGAGGATEST: gi|32861683|gb|CF001365.1|CF001365
genomic: ACCCGCTGGATGGCTCCTCCAACATCGACTGTGGTGTCTCAATCGGAACGgtgtgtcact ... ctctctgcagATCTTTGGGATTTACATGGTCAAAGACAAGGACAACGTGACCTTGGAGGAT
EST: CGACTGTGGTGTCTCAATCGGAACG ATCTTTGGGATTTACATGGTCAAAGACAAGGACAACGTGACCTTGGAGGATEST: gi|211164075|gb|FL013513.1|FL013513
genomic: CGACTGTGGTGTCTCAATCGGAACGgtgtgtcact ... ctctctgcagATCTTTGGGATTTACATGGTCAAAGACAAGGACAACGTGACCTTGGAGGAT
EST: CCCGCTGGATGGGTCCTCCCACATCGACTGTGGTGTCTNCA-TCGGAACG ATCTTTGGGATTTACATGGTCAAA
genomic: CCCGCTGGATGGCTCCTCCAACATCGACTGTGGTGTCT-CAATCGGAACGgtgtgtcact ... ctctctgcagATCTTTGGGATTTACATGGTCAAA
tcatatatatatatatatatatatatgctgctatattcggttctgctctctgcagATCTTTGGGATTTACATGGTCAAAGACAAGGACAACGTGACCTTGGAGGATGTGCTGCAGCCTGGAACAAACATGCTTGCTGCTGGCTACTGCATGTACG
ttctgctctct CT-rich tract
tatatatatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtcactgtcactcccggtggtgtttcaaaccttcttaccatcgatatatcatatatatatatatatatatatatgctgctatattcggttctgctctctgcagATCTTTGGGATTTACATGGTCAAAGACAAGGACAACGTGACCTTGGAGGATGTGCTGCAGCCTGGAACAAACATGCTTGCTGCTGGCTACTGCATGTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT