1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttactttcctgtaactctagttttatgtagtctgtgctaatttggctgaactaccaatgttttttttcttatgaaaagacatgttttctgctatttcagGCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAAAAGGCTGGAATTAGTAATAAAGGTGTAGACAAAACTTCGGATCATCATC
species | Zea mays |
transcript | GRMZM2G322090_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATGTAACAAGCTCAGTGAACCAAAAGATTACGTGCCTACTGAGCAAAAT GCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAAEST: gi|87152062|gb|DY396851.1|DY396851
genomic: CATGTAACAAGCTCAGTGAACCAAAAGATTACGTGCCTACTGAGCAAAATgtatgtatgc ... gctatttcagGCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAA
EST: CATGTAACAAGCTCAGTGAACCAAAAGATTACGTGCCTACTGAGCAAAAT GCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAAEST: gi|32930990|gb|CF035802.1|CF035802
genomic: CATGTAACAAGCTCAGTGAACCAAAAGATTACGTGCCTACTGAGCAAAATgtatgtatgc ... gctatttcagGCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAA
EST: ATTCCCTCANGCTCAGTGAACCAAAAGATTACGTGCCTACTGAGCAAAAT GCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAAEST: gi|18964086|gb|BM660801.1|BM660801
genomic: A-TGTAACAAGCTCAGTGAACCAAAAGATTACGTGCCTACTGAGCAAAATgtatgtatgc ... gctatttcagGCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAA
EST: CATGTAACNAGCTCAGTGAACCAAAAGATTACGTGCCTACTGAGCAAAAT GCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAAEST: gi|32932446|gb|CF037258.1|CF037258
genomic: CATGTAACAAGCTCAGTGAACCAAAAGATTACGTGCCTACTGAGCAAAATgtatgtatgc ... gctatttcagGCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAA
EST: CATGTAACAAGCTCAGTGAACCAAAAGATTACGTGCCTACTGAGCAAAAT GCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAA
genomic: CATGTAACAAGCTCAGTGAACCAAAAGATTACGTGCCTACTGAGCAAAATgtatgtatgc ... gctatttcagGCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAA
gctgaactaccaatgttttttttcttatgaaaagacatgttttctgctatttcagGCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAAAAGGCTGGAATTAGTAATAAAGGTGTAGACAAAACTTCGGATCATCATC
ttttctgctatttc CT-rich tract
aatgttttttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttactttcctgtaactctagttttatgtagtctgtgctaatttggctgaactaccaatgttttttttcttatgaaaagacatgttttctgctatttcagGCCTTGTCACAGCACTTACGTGGCATGCGTAGGCGCAGCCTTTTCAATGAAAAGGCTGGAATTAGTAATAAAGGTGTAGACAAAACTTCGGATCATCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA