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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggcagtgacgacattcctttccttccatcgatgcatccatccatccatatcgctaaacgaagctaagatcgtcgtcgatcgttactgaactattattactggtggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGATGTGTATAGCTTCGGCGTGCTGATAATGGAGATCATCACCGGCAGATGT

Basic information

species Zea mays
transcript GRMZM2G317938_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G317938_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g03410.1 (Oryza sativa), 3'ss of exon 4
gtgcggcagtgacgacattcctttccttccatcgatgcatccatccatccatatcgctaaacgaagctaagatcgtcgtcgatcgttactgaactattattactggtggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGATGTGTATAGCTTCGGCGTGCTGATAATGGAGATCATCACCGGCAGATGT
                      ||  |     | || ||  || | | |  ||  | || |  ||  | ||  | || |  ||| | ||||||        | |||   ||||||||||||||||| ||||| ||||||||||| || ||| | || |||||||||||||| |||||||| || || || ||||||||||| || || || ||||  
---------------------gttagtattgacaatccacaca-caacctttactg-tacataaaagttagtacatctt--atcatgactgaa--------attggctatgttgcagTTACGTGGCACCTGAATACGCCAGCACGGGGATGTTAAATGAGAGGAGCGATGTTTATAGCTTTGGAGTACTTATAATGGAGATTATAACGGGTAGATCA

upper sequence: GRMZM2G317938_T01 (Zea mays), 3'ss of exon 4
lower sequence: PP1S568_2V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------------------------------gtgcggcagtgacgacattcctttccttccatcgatgcatccatccatccatatcgctaaacgaagctaagatcgtcgtcgatcgttactgaactattattact-ggtggtgttgc--agTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGATGTGTATAGCTTCGGCGTGCTGATAATGGAGATCATCACCGGCAGATGT
                                           | | |||  |     |      | |  |  |  |  | | || |  || || | |  | |  ||   | |  ||  || ||    |   |     |||  | ||  || |  |  || ||||| ||||| |||||||| | ||| ||| ||||||| ||| | ||||||||||| ||||| || |||||  | |||||||||||||| ||  ||  |
gtaagctcaaggccctcctctggattgtattgtattgttgaaacagtagttgcagttataaacggcatttaatgtcgatttcttctagtcacatagttttatgtcgc-gtgtttctcaacgttctagtccccatccccattctttggctgtatcactcagGTACGTAGCGCCGGAGTACGCGAACACGGGCCTGCTGAATGAGCGAAGCGATGTGTACAGCTTTGGGGTGCTTCTCATGGAGATCATCACGGGGCGAGAT

upper sequence: GRMZM2G317938_T01 (Zea mays), 3'ss of exon 4
lower sequence: EFJ34699 (Selaginella moellendorffii), 3'ss of exon 4
gtgcggcagtgacgacattcctttccttccatcgatgcatccatccatccatatcgctaaacgaagctaagatcgtcgtcgatcgttactgaactattattactggtggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGATGTGTATAGCTTCGGCGTGCTGATAATGGAGATCATCACCGGCAGATGT
                                               |    | ||| || |||| ||      |    |  || ||  |   |  || || ||      ||  ||| ||||| || || |||||||| ||||| ||| |||| |||||||||||||| || ||||| ||||| || ||| | |||||  |||| ||||| ||    
----------------------------------------------gtaagca-cgcaaatcgaaactccagatgcttacattctttgtttttcccttttttct-----cgtcacagATACGTTGCTCCCGAGTACGCAAGCACGGGCTTGCTCAACGAGAGGAGCGACGTCTATAGTTTCGGAGTCCTGCTCATGGAACTCATAACCGGAAGGGAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28986497|gb|CB351167.1|CB351167
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|110525123|gb|EE029307.1|EE029307
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|50327269|gb|CO522395.1|CO522395
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|18168013|gb|BM337853.1|BM337853
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|17930860|gb|BM267820.1|BM267820
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|71449920|gb|DR830970.1|DR830970
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|148948180|gb|EC893695.2|EC893695
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|148974556|gb|EE025344.2|EE025344
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|17930959|gb|BM267919.1|BM267919
EST:     TTGTGCTCGGAGAGAAGCTACGTTGCGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|17930128|gb|BM267088.1|BM267088
EST:     ACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: ACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|71774236|gb|DR972114.1|DR972114
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|18162265|gb|BM332104.1|BM332104
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|18176160|gb|BM351214.1|BM351214
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|18174123|gb|BM349511.1|BM349511
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|101382927|gb|EB813517.1|EB813517
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|71761679|gb|DR959616.1|DR959616
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|18175008|gb|BM350396.1|BM350396
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|78091402|gb|DV519776.1|DV519776
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|18171117|gb|BM340957.1|BM340957
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|18165284|gb|BM335123.1|BM335123
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|88747895|gb|DY532036.1|DY532036
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|50332716|gb|CO527842.1|CO527842
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|18168209|gb|BM338055.1|BM338055
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|18166054|gb|BM335893.1|BM335893
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|148961318|gb|EE012046.2|EE012046
EST:     TTGTGCTCGGAGAGAAGGTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|110208205|gb|EC890102.1|EC890102
EST:     TTGTGCTCGGAGAGAAGGTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|18170385|gb|BM340225.1|BM340225
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|18163903|gb|BM333742.1|BM333742
EST:     ACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: ACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|76917499|gb|DV166864.1|DV166864
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|18172936|gb|BM348324.1|BM348324
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|110195160|gb|EC877057.1|EC877057
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|76913502|gb|DV165156.1|DV165156
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGGCATGCTGAACGAGAGGAGCG
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACC-GGCATGCTGAACGAGAGGAGCG
EST: gi|18164086|gb|BM333925.1|BM333925
EST:     TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGG                         TTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: TTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 56

TTGACCAGCAGTGGAACGCCAAAGTATCGGATTTCGGGCTCGCAAAGCTGTTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGATGTGTATAGCTTCGGCGTGCTGATAATGGAGATCATCACCGGCAGATGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 37

TTGACCAGCAGTGGAACGCCAAAGTATCGGATTTCGGGCTCGCAAAGCTGTTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGATGTGTATAGCTTCGGCGTGCTGATAATGGAGATCATCACCGGCAGATGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 36

TTGACCAGCAGTGGAACGCCAAAGTATCGGATTTCGGGCTCGCAAAGCTGTTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGATGTGTATAGCTTCGGCGTGCTGATAATGGAGATCATCACCGGCAGATGT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 44

TTGACCAGCAGTGGAACGCCAAAGTATCGGATTTCGGGCTCGCAAAGCTGTTGTGCTCGGAGAGAAGCTACGTTACGACCCGTGTCATGGGAACCTTCGGgtgcggcagt ... ggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGATGTGTATAGCTTCGGCGTGCTGATAATGGAGATCATCACCGGCAGATGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagctaagatcgtcgtcgatcgttactgaactattattactggtggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGATGTGTATAGCTTCGGCGTGCTGATAATGGAGATCATCACCGGCAGATGT
                             aactattatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcggcagtgacgacattcctttccttccatcgatgcatccatccatccatatcgctaaacgaagctaagatcgtcgtcgatcgttactgaactattattactggtggtgttgcagTTACGTGGCGCCTGAGTACGCCAGCACCGGCATGCTGAACGAGAGGAGCGATGTGTATAGCTTCGGCGTGCTGATAATGGAGATCATCACCGGCAGATGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG