1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gcaagctgttctccctagttctttcactcactctcaagttccacatgcatatattaatatctccgctctattcgtattctattacagGGTCTGAAAACTGGAGAGATAGGCATGGTCATTGGAACACACTGCTTAATAGCTGATAAAACTGAATTTTCAGCTTTACGTATCTCTGTTATAGATGAAC
species | Zea mays |
transcript | GRMZM2G315176_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTTGCTAACTGGTTCAATGTCCACAAGGGAGTCAAGGATAATTCGAGAT GGTCTGAAAACTGGAGAGATAGGCATGGTCATTGGAACACACTGCTTAATAEST: gi|194717074|gb|FK934227.1|FK934227
genomic: CCTTGCTAACTGGTTCAACGTCCACAAGGGAGTCAAGGATAATTCGAGATgcaagctgtt ... tctattacagGGTCTGAAAACTGGAGAGATAGGCATGGTCATTGGAACACACTGCTTAATA
EST: CCTTGCTAACTGGTTCAACGTCCACAAGGGAGTCAAGGATAATTCGAGAT GGTCTGAAAACTGGAGAGATAGGCATGGTCATTGGAACACACTGCTTAATAEST: gi|31355026|gb|CD439383.1|CD439383
genomic: CCTTGCTAACTGGTTCAACGTCCACAAGGGAGTCAAGGATAATTCGAGATgcaagctgtt ... tctattacagGGTCTGAAAACTGGAGAGATAGGCATGGTCATTGGAACACACTGCTTAATA
EST: CACAAGGGAGTCAAGGATAATTCGAGAT GGTCTGAAAACTGGAGAGATAGGCATGGTCATTGGAACACACTGCTTAATAEST: gi|32945931|gb|CF050750.1|CF050750
genomic: CACAAGGGAGTCAAGGATAATTCGAGATgcaagctgtt ... tctattacagGGTCTGAAAACTGGAGAGATAGGCATGGTCATTGGAACACACTGCTTAATA
EST: CCTTGCTAACTGGTTCAACGTCCACAAGGGAGTCAAGGATAATTTGAGAT GGTCTGAAAACTGGAGAGATAGGCATGGTCATTGGAACACACTGCTTAATA
genomic: CCTTGCTAACTGGTTCAACGTCCACAAGGGAGTCAAGGATAATTCGAGATgcaagctgtt ... tctattacagGGTCTGAAAACTGGAGAGATAGGCATGGTCATTGGAACACACTGCTTAATA
ctcaagttccacatgcatatattaatatctccgctctattcgtattctattacagGGTCTGAAAACTGGAGAGATAGGCATGGTCATTGGAACACACTGCTTAATAGCTGATAAAACTGAATTTTCAGCTTTACGTATCTCTGTTATAGATGAAC
tattaat putative branch site (score: 51)
ttctatt putative PPT
atgcatatattaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagctgttctccctagttctttcactcactctcaagttccacatgcatatattaatatctccgctctattcgtattctattacagGGTCTGAAAACTGGAGAGATAGGCATGGTCATTGGAACACACTGCTTAATAGCTGATAAAACTGAATTTTCAGCTTTACGTATCTCTGTTATAGATGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT