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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtctattttctgttattactgcatatatatttgcctttgtatgtggttgttttgacgtgccgcttactgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG

Basic information

species Zea mays
transcript GRMZM2G314679_T06
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G314679_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g21250.1 (Oryza sativa), 3'ss of exon 4
--gttgtctattttctgttattac---tgcatatatattt-gcctttgt--atgtggttgttt--tgacgtgccgcttactgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG
   ||||   | |||   |||| |   || |  | ||||| |    |||   |  || |||||  | |    | |||||||||||||||||||||||||||||||| ||||||| || |||||  |||| ||||||||||||||||| ||||||||||| ||||| ||
gtattgtacttcttccagtattccacatgaacttgtattttgttaatgttggtaaggctgtttctttaaagtcagcttactgtgctttagGGGTGATGTTGAGAAGAGGACTGCACTCGAGAATCTGGACTTGATACTTCTCTGCATCGATGAAATTGTAGATGGCGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211411155|gb|FK961654.1|FK961654
EST:     TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: gi|60356728|gb|DN223701.1|DN223701
EST:     TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: gi|32849532|gb|CD989213.1|CD989213
EST:     ACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: ACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: gi|15323565|gb|BI478787.1|BI478787
EST:     TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: gi|4681229|gb|AI629899.1|AI629899
EST:     TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: gi|32908218|gb|CF013031.1|CF013031
EST:     TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: gi|32938645|gb|CF043464.1|CF043464
EST:     ACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: ACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: gi|4646698|gb|AI491558.2|AI491558
EST:     TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GGGTGATGTTGAGAAGCGGTCTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: gi|5296305|gb|AI783075.1|AI783075
EST:     TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: gi|91873753|gb|EB403710.1|EB403710
EST:     TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: gi|5901227|gb|AW042327.1|AW042327
EST:     TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: gi|16925380|gb|BM078448.1|BM078448
EST:     TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: gi|6227104|gb|AW155808.1|AW155808
EST:     TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG                         GNGGTGATGTTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagG-GGTGATGTT-GAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatatttgcctttgtatgtggttgttttgacgtgccgcttactgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG
                                      cgcttac  putative branch site (score: 3)
             tttgtat  TA-rich tract