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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagatcttgttatgcgttggaaataaagcagatcttgtacctggtcatagcgtgcatgtagaatatagGAGGCGTATGCAAAATCTTGGGGAGTCAAGTTCTGATCCACACCCTGATTATTTCAATTTTGGGATAAATGAAAGTGAGGGTTGTAGCTTGTTATCTGAG

Basic information

species Zea mays
transcript GRMZM2G314386_T02
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211311912|gb|FL092760.1|FL092760
EST:     TCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAGAG                         GAGGCGTATGCAAAAGCTTGGGGAGTCAAGTTCTGATCCAC
genomic: TCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAGAGgtttgagatc ... tagaatatagGAGGCGTATGCAAAATCTTGGGGAGTCAAGTTCTGATCCAC
EST: gi|211311913|gb|FL092761.1|FL092761
EST:     TCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAGAG                         GAGGCGTATGCAAAAGCTTGGGGAGTCAAG
genomic: TCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAGAGgtttgagatc ... tagaatatagGAGGCGTATGCAAAATCTTGGGGAGTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgttggaaataaagcagatcttgtacctggtcatagcgtgcatgtagaatatagGAGGCGTATGCAAAATCTTGGGGAGTCAAGTTCTGATCCACACCCTGATTATTTCAATTTTGGGATAAATGAAAGTGAGGGTTGTAGCTTGTTATCTGAG
                                             tagaatata  TA-rich tract