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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttcggtcccaaatttcacttttaacatgattatatgcttctggatttctgcctgcctaactcacatttgatctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTG

Basic information

species Zea mays
transcript GRMZM2G311165_T03
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116824436|gb|EC868056.1|EC868056
EST:     ACTGTTTGGTGCAGTTGGCACCTTAATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATC-AGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|19057804|gb|BM736471.1|BM736471
EST:     TGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: TGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|116820150|gb|EC863342.1|EC863342
EST:     -CTGTTTGGTGCAG-TGGCACCTTGATCTCTTTTAC-GTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|32831753|gb|CD971431.1|CD971431
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCTTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgattatatgcttctggatttctgcctgcctaactcacatttgatctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTG
     ttatat  TA-rich tract