1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatcattgatgctcatgaatcgctagccttaaaaatgaaaactgctgggtggtggcatgatgccccccgtctaacggtggggaacacgttttactggcagCATGTGGGATGAAGCTGGCCACAGCAGGGTATGGCGTGTTTGGTATCGATTATGAGGGCCACGGCAAGTCCATGGGTGCCAGGTGCTACATCCACAAGTT
species | Zea mays |
transcript | GRMZM2G306851_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tgggtggtggcatgatgccccccgtctaacggtggggaacacgttttactggcagCATGTGGGATGAAGCTGGCCACAGCAGGGTATGGCGTGTTTGGTATCGATTATGAGGGCCACGGCAAGTCCATGGGTGCCAGGTGCTACATCCACAAGTT
gtctaac putative branch site (score: 8)
ttttact putative PPT
ttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcattgatgctcatgaatcgctagccttaaaaatgaaaactgctgggtggtggcatgatgccccccgtctaacggtggggaacacgttttactggcagCATGTGGGATGAAGCTGGCCACAGCAGGGTATGGCGTGTTTGGTATCGATTATGAGGGCCACGGCAAGTCCATGGGTGCCAGGTGCTACATCCACAAGTT
- - - tgatgct
- - - - - - -catgaat
- - - - - - - - - - - - - - - - aaatgaaa
- - - - - - - - - - - - - - - - - - - - actgctg
- - - - - - - - - - - - - - - - - - - - - - - -ggtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatg