1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtgttgagtcacattctcactgtcatctgtccaatactgattctcagtcacaaaaatgatttcagtagtgtttgcatttatctatttattttctaggcagGTCTTGGTGGAGCTAGGGATGCAACAAATGTTATTCGAAGTACTGAATTAGCAGCATCTGTCATAACAACAGTAGGGAGGGAACATCTGGTTGCATTGGG
species | Zea mays |
transcript | GRMZM2G304915_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTCATTTCTTCTATTCTCACAACAGAATGTTGACATTGCCATCATTGAA GCAGGTCTTGGTGGAGCTAGGGATGCAACAAATGTTATTCGAAGTACTGAAEST: gi|31353836|gb|CD438193.1|CD438193
genomic: TCTCATTTCTTCTATTCTCACAACAGAATGTTGACATTGCCATCATTGAAgtaagttaca ... ttctaggcagG----TCTTGGTGGAGCTAGGGATGCAACAAATGTTATTCGAAGTACTGAA
EST: TCTCATTTCTTCTATTCTCCCAACAGAATGTTGACATTGCCATCATTGAA GCAGGTCTTGGTGGAGCTAGGGATGCAACAAATGTTATTCGAAGTACTGAAEST: gi|71429520|gb|DR810570.1|DR810570
genomic: TCTCATTTCTTCTATTCTCACAACAGAATGTTGACATTGCCATCATTGAAgtaagttaca ... ttctaggcagG----TCTTGGTGGAGCTAGGGATGCAACAAATGTTATTCGAAGTACTGAA
EST: TCTCATTTCTTCTATTCTCACAACAGAATGTTGACATTGCCATCATTGAA GCAGGTCTTGGTGGAGCTAGGGATGCAACAAATGTTATTCGAAGTACTGAAEST: gi|149082905|gb|EE172138.2|EE172138
genomic: TCTCATTTCTTCTATTCTCACAACAGAATGTTGACATTGCCATCATTGAAgtaagttaca ... ttctaggcagG----TCTTGGTGGAGCTAGGGATGCAACAAATGTTATTCGAAGTACTGAA
EST: CTCATTTCTTCTATTCTCACAACAGAATGTTGACATTTGC-ATCATTGAA GTCTTGGTGGAGCTAGGGATGCAACAAATGTTATTCGA
genomic: CTCATTTCTTCTATTCTCACAACAGAATGTTGACATT-GCCATCATTGAAgtaagttaca ... ttctaggcagGTCTTGGTGGAGCTAGGGATGCAACAAATGTTATTCGA
agtcacaaaaatgatttcagtagtgtttgcatttatctatttattttctaggcagGTCTTGGTGGAGCTAGGGATGCAACAAATGTTATTCGAAGTACTGAATTAGCAGCATCTGTCATAACAACAGTAGGGAGGGAACATCTGGTTGCATTGGG
tctatttattttct CT-rich tract
tttgcatttatctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttgagtcacattctcactgtcatctgtccaatactgattctcagtcacaaaaatgatttcagtagtgtttgcatttatctatttattttctaggcagGTCTTGGTGGAGCTAGGGATGCAACAAATGTTATTCGAAGTACTGAATTAGCAGCATCTGTCATAACAACAGTAGGGAGGGAACATCTGGTTGCATTGGG
- - - - -cacattc
- - - - - - - - - - - - - - - - - -actgatt
- - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc