1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtactgtcttgtttcccgccagatgatgtcattgtgggttctgaaattgtttatttactgctgctttttctgtgatgcagTTAAGCAGCTGTTTTCTTATATGCATGAAAGATGACAGCATTGAGGGAATCTATGAAACCCTGAAAGAGTGTGCTGTAATAAGCAAATCTGCTGGAGGAA
species | Zea mays |
transcript | GRMZM2G304362_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTACTCATGCTTCACCGACGCTTTTCAATGCTGGCACGCCGAGGCCCCAA TTAAGCAGCTGTTTTCTTATATGCATGAAAGATGACAGCATTGAGGGAATCEST: gi|32931198|gb|CF036010.1|CF036010
genomic: TTACTCATGCTTCACCGACGCTTTTCAATGCTGGCACGCCGAGGCCCCAAgtactgtctt ... tgtgatgcagTTAAGCAGCTGTTTTCTTATATGCATGAAAGATGACAGCATTGAGGGAATC
EST: TTACTCATGCTTCACCGACGCTTTTCAATGCTGGCACGCCGAGGCCCCAA TTAAGCAGCTGTTTTCTTATATGCATGAAAGATGACAGCATTGAGGGAATCEST: gi|31355336|gb|CD439693.1|CD439693
genomic: TTACTCATGCTTCACCGACGCTTTTCAATGCTGGCACGCCGAGGCCCCAAgtactgtctt ... tgtgatgcagTTAAGCAGCTGTTTTCTTATATGCATGAAAGATGACAGCATTGAGGGAATC
EST: TTACTCATGCTTCACCGACGCTTTTCAATGCTGGCACGCCGAGGCCCCAA TTAAGCAGCTGTTTTCTTATATGCATGAAAGATGACAGCATTGAGGGAATC
genomic: TTACTCATGCTTCACCGACGCTTTTCAATGCTGGCACGCCGAGGCCCCAAgtactgtctt ... tgtgatgcagTTAAGCAGCTGTTTTCTTATATGCATGAAAGATGACAGCATTGAGGGAATC
atgtcattgtgggttctgaaattgtttatttactgctgctttttctgtgatgcagTTAAGCAGCTGTTTTCTTATATGCATGAAAGATGACAGCATTGAGGGAATCTATGAAACCCTGAAAGAGTGTGCTGTAATAAGCAAATCTGCTGGAGGAA
ctgctgctttttct CT-rich tract
tgaaattgtttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtcttgtttcccgccagatgatgtcattgtgggttctgaaattgtttatttactgctgctttttctgtgatgcagTTAAGCAGCTGTTTTCTTATATGCATGAAAGATGACAGCATTGAGGGAATCTATGAAACCCTGAAAGAGTGTGCTGTAATAAGCAAATCTGCTGGAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA