1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtacatgatgacctgaaatttatgtttggctacttattcttagttgtatgtagcattgtgctaacttttgaaccttcctatcgtgattaattgcagATATTTTGCAACATGTGCTTGTGTAGATTATTGGGCTGTTGTTCTTCCACTAATTAAGTCGCTTAAAGGTTCTCCAATAATTGCTTACCATGGGAAGATG
species | Zea mays |
transcript | GRMZM2G303752_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTCAGCTTGTTGTTTTCCTTGTGCAGAATAGTGGGAAGAAAATAATGGT ATATTTTGCAACATGTGCTTGTGTAGATTATTGGGCTGTTGTTCTTCCACTEST: gi|26456621|gb|CA828204.1|CA828204
genomic: TCTCAGCTTGTTGATTTCCTTGTGCAGAATAGTGGGAAGAAAATAATGGTgtaagtacat ... ttaattgcagATATTTTGCAACATGTGCTTGTGTAGATTATTGGGCTGTTGTTCTTCCACT
EST: TCTCAGCTTGTTGTTTTCCTTGTGCAGAATAGTGGGAAGAAAATAATGGT ATATTTTGCAACATGTGCTTGTGTAGATTATTGGGCTGTTGTTCTTCCACTEST: gi|148986421|gb|EE030162.2|EE030162
genomic: TCTCAGCTTGTTGATTTCCTTGTGCAGAATAGTGGGAAGAAAATAATGGTgtaagtacat ... ttaattgcagATATTTTGCAACATGTGCTTGTGTAGATTATTGGGCTGTTGTTCTTCCACT
EST: TCTCAGCTTGTTGATTTCCTTGTGCAGAATAGTGGGAAGAAAATAATGGT ATATTTTGCAACATGTGCTTGTGTAAATTA
genomic: TCTCAGCTTGTTGATTTCCTTGTGCAGAATAGTGGGAAGAAAATAATGGTgtaagtacat ... ttaattgcagATATTTTGCAACATGTGCTTGTGTAGATTA
agttgtatgtagcattgtgctaacttttgaaccttcctatcgtgattaattgcagATATTTTGCAACATGTGCTTGTGTAGATTATTGGGCTGTTGTTCTTCCACTAATTAAGTCGCTTAAAGGTTCTCCAATAATTGCTTACCATGGGAAGATG
tgattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacatgatgacctgaaatttatgtttggctacttattcttagttgtatgtagcattgtgctaacttttgaaccttcctatcgtgattaattgcagATATTTTGCAACATGTGCTTGTGTAGATTATTGGGCTGTTGTTCTTCCACTAATTAAGTCGCTTAAAGGTTCTCCAATAATTGCTTACCATGGGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG