1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttagttttttttcatatgtgttgaccactatcccagttatactctggcagtcttactagttactactcattttacttatagTTGGTTCAGCATGGAGTCTACAACCAAGGGATGGGCTATATGCAGCCACAG
species | Zea mays |
transcript | GRMZM2G303465_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGATGCAATTAGTCCCCATGGTGGCACCAGTAGCTCAAGTAATCAG TTGGTTCAGCATGGAGTCTACAACCAAGGGATGGGCTATATGCAEST: gi|19272479|gb|BM888735.1|BM888735
genomic: AGAAGGATGCAATTAGTCCCCATGGTGGCACCAGTAGCTCAAGTAATCAGgttagttttt ... ttacttatagTTGGTTCAGCATGGAGTCTACAACCAAGGGATGGGCTATATGCA
EST: AGAAGGATGCAATTAGTCCCCATGGTGGCACCAGTAGCTCAAGTAATCAG TTGGTTCAGCATGGAGTCTACAACCAAGGGATGGGCTATATGCAGCCACAG
genomic: AGAAGGATGCAATTAGTCCCCATGGTGGCACCAGTAGCTCAAGTAATCAGgttagttttt ... ttacttatagTTGGTTCAGCATGGAGTCTACAACCAAGGGATGGGCTATATGCAGCCACAG
actatcccagttatactctggcagtcttactagttactactcattttacttatagTTGGTTCAGCATGGAGTCTACAACCAAGGGATGGGCTATATGCAGCCACAG
gtcttac putative branch site (score: 3)
ctcatttt putative PPT
tcattttacttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttttttttcatatgtgttgaccactatcccagttatactctggcagtcttactagttactactcattttacttatagTTGGTTCAGCATGGAGTCTACAACCAAGGGATGGGCTATATGCAGCCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA