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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcatatggcacatacgtacttccgtttccattatggttaattcaacacaataattactaatgctccaaataatacctgcagCATGGCAAAGGAGCTTAATTGCGGACTACGGTGTTCCACTAATGGTGATACTTTGGACATCATTGTCATATTCATTGCCAAGCAGGATCCCTTCAGGGGT

Basic information

species Zea mays
transcript GRMZM2G302559_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G302559_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g08430.1 (Oryza sativa), 3'ss of exon 5
gtttgtcatatggcacatacgtacttccgtttccattatggttaattcaacacaataattactaatgctccaaataata-cctgcagCATGGCAAAGGAGCTTAATTGCGGACTACGGTGTTCCACTAATGGTGATACTTTGGACATCATTGTCATATTCATTGCCAAGCAGGATCCCTTCAGGGGT
||||||||||  | || |   |  ||   |||  ||    ||    || | | |  || |||| || | |||  ||||| |||||||  |||||||| ||||| ||||| ||||| || |||||||| |||||  || | |||||| | ||||| |||||||||||||||| |||||||||||||||
gtttgtcata-agtaccttaattttttt-tttttatctcagtc---tccaaatatcaactactcatacgccagctaataacctgcagGGTGGCAAAGAAGCTTCATTGCTGACTATGGCGTTCCACTCATGGTTGTAGTCTGGACAGCTTTGTCGTATTCATTGCCAAGCAAGATCCCTTCAGGGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccattatggttaattcaacacaataattactaatgctccaaataatacctgcagCATGGCAAAGGAGCTTAATTGCGGACTACGGTGTTCCACTAATGGTGATACTTTGGACATCATTGTCATATTCATTGCCAAGCAGGATCCCTTCAGGGGT
                            tactaat  putative branch site (score: 1)
                    acaataattactaat  TA-rich tract