1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attgtagcgaggtttagtttcatttaaagctgaagtttttccaatagatatgccattttgttcaaatttctcttatttaacgctgaagtcctgcttgcagATTCAGGAGCTCTTCTTACATTTGGGTGGGGGCTGTATGGACAG
species | Zea mays |
transcript | GRMZM2G302245_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGCAGTAACAG ATTCAGGAGCTCTTCTTACATTTGGGTGGGGGCTGTATGGACAGEST: gi|211521870|gb|FK965546.1|FK965546
genomic: CTGCAGTAACAGgtcacttata ... ctgcttgcagATTCAGGAGCTCTTCTTACATTTGGGTGGGGGCTGTATGGACAG
EST: TTGTGTGAGGGCCATTGCTTGTGGAGGTCGTCACAGTGCTGCAGTAACAG ATTCAGGAGCTCTTCTTACATTTGGGTGGGGGCTGTATGGACAG
genomic: TTGTGTGAGGGCCATTGCTTGTGGAGGTCGTCACAGTGCTGCAGTAACAGgtcacttata ... ctgcttgcagATTCAGGAGCTCTTCTTACATTTGGGTGGGGGCTGTATGGACAG
agatatgccattttgttcaaatttctcttatttaacgctgaagtcctgcttgcagATTCAGGAGCTCTTCTTACATTTGGGTGGGGGCTGTATGGACAG
atttaac putative branch site (score: 76)
tcctgctt putative PPT
aaatttctcttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtagcgaggtttagtttcatttaaagctgaagtttttccaatagatatgccattttgttcaaatttctcttatttaacgctgaagtcctgcttgcagATTCAGGAGCTCTTCTTACATTTGGGTGGGGGCTGTATGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - -tttcatt
- - - - - - - - - - - - - - gctgaag
- - - - - - - - - - - - - - - - - - - - - - - - - tgccatt