1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acagaaagaagcaaaatgtagatttctgcatagtactctaactgcatcatgttgtagtctaggatttaacgttttgcttacatctgctgtacttccatagGTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAGCTTGGTGGTTACCTGGAATCTCGGTTGGCTGGTTATCCAACAACATTGAATGAAGATGAAGCTA
species | Zea mays |
transcript | GRMZM2G302195_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCGGACGAAATCCAGTCTATACTCTCTTCTGAAGGAGATACATGTCCA GTTAGTCCATGTACAGAGCGACCTGTACTTGATCAGCTTGGTGGTTACCTGEST: gi|32803989|gb|CD956225.1|CD956225
genomic: ATCCAGACGAAATGCAGTCTATACTCTCTTCTGAAGGAGATACATGTCCAgtgagtctgc ... acttccatagGTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAGCTTGGTGGTTACCTG
EST: ATCCAGACGAAATGCAGTCTATACTCTCTTCTGAAGGAGATACATGTCCA GTTAGTCCATATACAGAGCGAGCTGTACTTGATCAGCTTGGTGGTTACCTGEST: gi|211474396|gb|FL070285.1|FL070285
genomic: ATCCAGACGAAATGCAGTCTATACTCTCTTCTGAAGGAGATACATGTCCAgtgagtctgc ... acttccatagGTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAGCTTGGTGGTTACCTG
EST: ATCCAGACGAAATGCAGTCTATACTCTCTTCTGAAGGAGATACATGTCCA GTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAGCTTGGTGGTTACCTG
genomic: ATCCAGACGAAATGCAGTCTATACTCTCTTCTGAAGGAGATACATGTCCAgtgagtctgc ... acttccatagGTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAGCTTGGTGGTTACCTG
atcatgttgtagtctaggatttaacgttttgcttacatctgctgtacttccatagGTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAGCTTGGTGGTTACCTGGAATCTCGGTTGGCTGGTTATCCAACAACATTGAATGAAGATGAAGCTA
tgcttac putative branch site (score: 2)
tacttcc putative PPT
atttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagaaagaagcaaaatgtagatttctgcatagtactctaactgcatcatgttgtagtctaggatttaacgttttgcttacatctgctgtacttccatagGTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAGCTTGGTGGTTACCTGGAATCTCGGTTGGCTGGTTATCCAACAACATTGAATGAAGATGAAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC