1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatttcttccttccaaattttctatctatgcaccctatttttcaagatgtatagcatgatgtgcgaaacaaatttagggatcatcctttttcagtttgtcatacatctattcgggctgtgtcattgttaaaattgatttgttggagcatattaactagtatgaaaactgtgcttgcatttgatcagATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTGTTCTATCTGGCGCAAACATAATGTGTCCTGGGTTGACTTCACCTGGTGG
species | Zea mays |
transcript | GRMZM2G180990_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGT ATCCTGATATCATGAAGAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTGEST: gi|60337104|gb|DN204077.1|DN204077
genomic: CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGTgtaatttctt ... atttgatcagATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTG
EST: CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGT ATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTGEST: gi|32830364|gb|CD970042.1|CD970042
genomic: CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGTgtaatttctt ... atttgatcagATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTG
EST: CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGT ATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTGEST: gi|31611966|gb|CD568588.1|CD568588
genomic: CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGTgtaatttctt ... atttgatcagATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTG
EST: CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGT ATCCTGATATCATGAAAAAGCTCCAAGTGGATAGAGGTGCTATCAAATTTG
genomic: CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGTgtaatttctt ... atttgatcagATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTG
attgatttgttggagcatattaactagtatgaaaactgtgcttgcatttgatcagATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTGTTCTATCTGGCGCAAACATAATGTGTCCTGGGTTGACTTCACCTGGTGG
tattaac putative branch site (score: 1)
atattaactagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcttccttccaaattttctatctatgcaccctatttttcaagatgtatagcatgatgtgcgaaacaaatttagggatcatcctttttcagtttgtcatacatctattcgggctgtgtcattgttaaaattgatttgttggagcatattaactagtatgaaaactgtgcttgcatttgatcagATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTGTTCTATCTGGCGCAAACATAATGTGTCCTGGGTTGACTTCACCTGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG