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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattattttggattgatgttaggatctaatgatagtgatattatatcacgactgtatgtatactgatattttccctaatgtgttactgttgaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA

Basic information

species Zea mays
transcript GRMZM2G180720_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
--tattattttggattgatgttaggatctaatgatagtg-atattatatcacgactgtatgtatactgatattttccctaatgtgttactgttgaat-ttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
  |||| | || ||| ||| |||  |  || | | || | ||     | |||    |||| | || |||||||      | | ||    |||||||| || ||||||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||| |||||||||||||| 
tatattgtatttgat-gat-ttacaacatact-acagcgtatgcagcaacacttgagtattt-tattgatattacttaaattttggggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG

upper sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA01G28460.1 (Glycine max), 3'ss of exon 7
-------------------------------------------------tattattttggattgatgt-taggatctaatgatagtgatattatatcacgactgtatgta-tactgat--attttccctaatgtgttactgttga-atttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
                                                  |  ||||   |||| |||     || | ||| |  ||     | || |     ||  ||  || | ||  | | |   ||| |  |   | ||||   || ||||||| | ||||| |||||||| ||||||||| | || || || ||  | |||| |||||| |||||||||||||| || ||||| |||||||| || |||
gtaagcatatttttgtaattttttactgttagtttttgaattggttcaacaagatttcttattgttgtgctttatttcatgttgttgg-gccaaattaacttagtgggttctatttatcaaatgttgttaacgaatggattttgatgcttgtagGTGGGTAGCTGCTCAGAGCGTCTTCTACCACCTGTACAATCAAGTCCCATACACGTCTCTTGATCAGATTTCTCCCTTAACATTTAGCATTGGAAACACA

upper sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA18G12080.1 (Glycine max), 3'ss of exon 4
tattattttggattgatgttaggatctaatgatagtgatattatatcacgactgtatgtatactgatattttccctaa-tgtgttactgttgaatttata-----gGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
       |||  |||    | |  |  |       |  | | |      |  | |     |    ||||| |  |||| ||| |  |||   | | || |     ||||| | ||||| || || || ||||| ||  |||| || || ||||| ||||||||||| |||||||| ||||| ||||| || |||||||| || || 
-----gattgagttgtctgttgttttcatcctctatcttttgagtctgagcttctgctcttctcaatattatgactaaatgtatggctgacaattgtacacaacaGGTGGGTAGCTGCTCAAAGTGTATTCTATCATCTATACAATCAAGTGTCGTACATGTCTCTGGATCAGATCTCTCCCTTGACGTTTAGCATTGGAAACAC-

upper sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G25290.1 (Glycine max), 3'ss of exon 4
tattattttggattgatgttaggatctaatgatagtgatattatatcacgactgtatgtatactgatattttccctaa-tgtgttactgttgaatttata-----gGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
      ||  |||||    | |     |       |  | | ||     |  | |   | |    ||||| |  |||| ||| |   || | | |||| |     ||||| | ||||| || || || ||||| ||  |||| || || ||||| ||||||||||| |||||||| ||||| ||||| || |||||||| || || 
------ttctgattgtctgttgttctcatcctctatattttgattctgagcttctgcttttctcaatattatgactaaatgtatggttggtaattttacacaacagGTGGCTAGCTGCTCAAAGTGTATTCTATCATCTATACAATCAAGTGTCATACATGTCTCTGGATCAGATCTCTCCTTTGACGTTTAGCATTGGAAACACC

upper sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA15G11270.1 (Glycine max), 3'ss of exon 3
-----tattattttggattgatgttaggatctaatgatagtgatattatatcacgactgtatgtatactgatattttccctaatgtgttactgttgaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
       |  ||||   ||    ||      |||  |     |    |  | | | ||   | ||||      | ||  ||||||  ||  || ||  |||| |||||| | ||||| ||||| || ||||||||||| || || || || || ||||||||||| |||||||||||||| || |||||||||||||| || |||
aattcagtctttttttcttttccttcttccttaaccac--ccacccaaccttatgtctccctttataaaatgttgttaactaatggatt-ttgatg--tttacagGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATACATGTCTCTTGATCAGATTTCTCCCTTAACATTCAGCATTGGAAACACA

upper sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G45840.1 (Glycine max), 3'ss of exon 4
tattattttggattgatgttaggatctaatgatagtgatattatatcacgactgtatgtatactgatattttccctaatg-tgttactgttgaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
 | || | ||  ||  |  |    ||   |||   |   |  |  |   |  | | | | |  ||  |||   | ||  | || ||||  || |   | |||||| | || || || ||| | || || ||  | || || || ||||| ||||||||||| ||| |||| ||||| |||||||| |||||||| || || 
gagtaatctgattttcttgtcttttcacttgaggttctgaaaaacttctgcgtttctttgtcttgtaattaaacatatggctgctacttgtgcaca-acagGTGGGTGGCAGCTCAAAGCATATTTTATCATCTGTACAATCAAGTGTCGTACATGTCTCTGGATGAGATCTCTCCCTTGACATTTAGCATTGGAAACACC

upper sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA13G27680.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------tattattttggattgatgt---taggatctaatgatagtg----atattatatcac--gactgtatgtatactgatatt-ttccctaatgtgttactgttgaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
                                                  |  ||||   |||| |||   |   || | ||| |  ||    | ||||  | |   || | | | ||| |  || || ||  ||||||  ||  || ||  ||| ||||||| | ||||||||||| || || |||||||| || || || || || ||||||||||| |||||||||||||| || ||||| |||||||| || |||
gtaagcacatttttttaattttttactgttagtttttgaattggttcaacaagatttcttattgttgtgctttttatttcatgttgttgggccaaattaacttagtggattctgtttat-caaatgttgttaactaatggatt-ttgatg--tttgtagGTGGGTAGCTGCACAGAGTGTCTTTTACCACTTGTACAATCAAGTCTCATACATGTCTCTTGATCAGATTTCTCCCTTAACATTTAGCATTGGAAACACA

upper sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA17G01890.1 (Glycine max), 3'ss of exon 3
--tattattttggattgatgttaggatctaatgatagtgatattatatcacgactgtatgtatactgatattttccctaatgtgttactgttgaattt-atagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
    | ||||  ||||| ||  | |    ||    | | |  || |    | | ||| |  | | | |    ||   |||    |   | || | ||| | |||||| | ||||| ||||| || ||||||||  | || || || || || ||||||||||| |||||||||||||| || ||||||||||| || || |||
ctggtcatttgtgattgctgccaag--tcaaaaccaatcactttcttcatcaaatgttta-acattaaatcattaattaactactgggttttaatttttacagGTGGGTAGCTGCCCAGAGTGTCTTCTACCATCTGTACAATCAAGTCTCTTACATGTCTCTTGATCAGATTTCTCCCTTAACATTCAGCATAGGGAACACA

upper sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA07G38830.1 (Glycine max), 3'ss of exon 4
tattattttggattgatgttaggatctaatgatagtgatattatatcacgactgtatgtatactgatattttccctaatgtgttactgttgaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
                                             || |   |  |||| |  ||||    |  |   |   |||   || |    |||||        || | |||    | |      ||  | || ||   | | |||||   |  |  | |  ||   | |  |   |  |  ||||| |||    
--------------------------------------------gtctc--ttacatgtctcttgatcagatttc---tcccttaacattcagC--ATAGGGAACACAATGAAGAGAATTCGGTAATTGTCTCTTCTATCCTTATCTTCTACACACCAATTCAGCCCATCAATGCTCTTGGAGCCGCCATTG-CAA----

upper sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
lower sequence: PP1S70_177V6.1 (Physcomitrella patens), 3'ss of exon 4
-----------------------------------------------------------------------------------------------------tattattttggattgatgttaggat---ctaatgatagtgatattatatcacgactgtatgtatactgatattttccctaatgtgttactgttgaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
                                                                                                     |    |||| | | ||    || ||    | | |||| ||| | |  | || ||  ||  |  |      | |     |  ||    |  ||||  | | ||||||| | |  || ||||| || ||||||||||| || ||||||||||| |||||||| ||  |  ||||||| ||| |||| |||||||||||||| || 
gtagctgcatctattagttttcctgttactactagaacgtaaactgtattgttggtgcggtttttagtatgtgagcttgtgcatgagctttccccaggtggtgaagttttcggtcgagtagagaatgcgttgaggataatgagagtggagcatgagggtcaggttttaaccaatccgtttggtg----atggttg--tgtgtagGTGGGTGGTGGCGCAGAGTGTATTCTACCACTTGTACAACCAGGTGTCATACATGTCGCTGAACGAGATTTCGCCACTGACCTTCAGCATTGGCAACACC

upper sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
lower sequence: PP1S18_317V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------tattattttggattgatgttaggatctaatgatagtgata-----ttatatca-cgactgt-atgtatactgatattttccctaatgtgtta-----ctgttgaatt-tatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
                                             ||| ||  ||  | ||  ||||| |   | |  || |      ||| || | ||| | | | | ||   | |||||   | | |   | |       ||||     |  |||||| | |  |||||||| ||||||||||||||||| ||||| ||||| ||||||||  | ||  | || || ||| | ||||||||| ||||||| || 
gtgaagcccccctccaggaacaccttgcagaacacctttgtgtctttacttctgagggttgc-aggatatcgcggtgttgctgcgggtttacatgagcgaatattacgaatgacggtatttaagcaagttgataagaaaatggttgtgcgatgcagGTGGGTAGTGGCACAGAGTGTGTTCTACCACTTATACAACCAAGTGTCATACATGTCATTGGACAAAATCTCCCCACTCACATTCAGCGTTGGCAACACG

upper sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
lower sequence: EFJ35859 (Selaginella moellendorffii), 3'ss of exon 3
tattattttggattgatgttaggatctaatgatagtgatattatatcacgactgtatgtatactgatattttccctaatgtgttactgttgaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
             | | ||| |   ||    |   ||| | | |  |    | ||     | ||    || |  || | |   | | ||    |    |||||| |    ||||||||||| ||||||||||| || ||||| || || || ||||| || || ||||| |||||  |||| ||||||||||| || || 
------------gtaacgttggtcacttccaaacttgagactctgccttccccgt---cgttct----ttctttctcacgccgt-ccgtctgctaaccagGTGGGTGATCGCACAGAGCGTCTTCTACCACTTGTACAACCAAGTCTCGTATATGTCGCTGGACCAGATATCTCCGCTGACTTTCAGCATTGGTAACACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76908644|gb|DV163027.1|DV163027
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|67042737|gb|CO468992.1|CO468992
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGNTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|60396004|gb|DN228874.1|DN228874
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|60345607|gb|DN212580.1|DN212580
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|76923750|gb|DV169643.1|DV169643
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTTTG                         GTGGATTGCTGCACAGAGCGTGTTTTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211235246|gb|FL454385.1|FL454385
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|71440959|gb|DR822009.1|DR822009
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|4827719|gb|AI668411.1|AI668411
EST:     GCTGCTGGTTGGCAAAAGGTTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTCCCGCTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211039687|gb|FL176198.1|FL176198
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|84976998|gb|DW475420.1|DW475420
EST:     GGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|14208320|gb|BG841998.1|BG841998
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211127527|gb|FL066343.1|FL066343
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|60348620|gb|DN215593.1|DN215593
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|33102249|gb|CF062209.1|CF062209
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211127528|gb|FL066344.1|FL066344
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAAAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCCAGGTGTCCC
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACC-AGGTGTCC-
EST: gi|16925074|gb|BM078142.1|BM078142
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|33771219|gb|CF273398.1|CF273398
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|60344400|gb|DN211373.1|DN211373
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|4647070|gb|AI622145.1|AI622145
EST:     GCTGCTGGTTGGCAAAAGGTTCTTGCANAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCNCAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211128448|gb|FL066345.1|FL066345
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|60353891|gb|DN220864.1|DN220864
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|67040435|gb|CO466690.1|CO466690
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|16918835|gb|BM073919.1|BM073919
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTCCCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211039689|gb|FL176200.1|FL176200
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|29947343|gb|CB816605.1|CB816605
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|78084229|gb|DV512622.1|DV512622
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211039688|gb|FL176199.1|FL176199
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|8930246|gb|BE225010.1|BE225010
EST:     TGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: TGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|32920065|gb|CF024877.1|CF024877
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|91868370|gb|EB400011.1|EB400011
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|5030714|gb|AI714908.1|AI714908
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacgactgtatgtatactgatattttccctaatgtgttactgttgaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA
             tatactgatatttt  TA-rich tract