1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgaatattgacgctactacacattcacttttacaatagtgattcttctttgtatgacaacctcatatgtgcagATTGTACAAAGCTTACCAAAAATTGTATGCATCCATGCATGATAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATG
species | Zea mays |
transcript | GRMZM2G179732_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGTCATCAGAATTTCCCTCACCCATAAGTAACAAAAAGCAGAAGAAGAG ATTGTACAAAGCEST: gi|211302534|gb|FL247480.1|FL247480
genomic: GTGTCATCAGAATTTCCCTCACCCATAAGTAACAAAAAGCAGAAGAAGGGgtatgaatat ... atatgtgcagATTGTACAAAGC
EST: GTGTCATCAGAATTTCCCTCACCCATAAGTAACAAAAAGCAGAAGAAGGG ATTGTACAAAGCTTACCAAAAATTGTATGCATCCATGCATGATAAAGCAACEST: gi|32808296|gb|CD960530.1|CD960530
genomic: GTGTCATCAGAATTTCCCTCACCCATAAGTAACAAAAAGCAGAAGAAGGGgtatgaatat ... atatgtgcagATTGTACAAAGCTTACCAAAAATTGTATGCATCCATGCATGATAAAGCAAC
EST: GTGTCATCAGAATTTCCCTCACCCATAAGTAACAAAAAGCAGAAGAAGGG ATTGTACAAAGCTTACCAAAAATTGTATGCATCCATGCGTGATAAAGCAACEST: gi|211258574|gb|FL475694.1|FL475694
genomic: GTGTCATCAGAATTTCCCTCACCCATAAGTAACAAAAAGCAGAAGAAGGGgtatgaatat ... atatgtgcagATTGTACAAAGCTTACCAAAAATTGTATGCATCCATGCATGATAAAGCAAC
EST: GTGTCATCAGAATTTCCCTCACCCATAAGTAACAAAAAGCAGAAGAAGGG ATTGTACAAAGCTTACCAAAAATTGTATGCATCCATGCATGATAAAGCAAC
genomic: GTGTCATCAGAATTTCCCTCACCCATAAGTAACAAAAAGCAGAAGAAGGGgtatgaatat ... atatgtgcagATTGTACAAAGCTTACCAAAAATTGTATGCATCCATGCATGATAAAGCAAC
cacattcacttttacaatagtgattcttctttgtatgacaacctcatatgtgcagATTGTACAAAGCTTACCAAAAATTGTATGCATCCATGCATGATAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATG
ttttacaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaatattgacgctactacacattcacttttacaatagtgattcttctttgtatgacaacctcatatgtgcagATTGTACAAAGCTTACCAAAAATTGTATGCATCCATGCATGATAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT