1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacttagattaattgtctcacttgatctctagttttttgttgaaactaagttttggatctacttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCG
species | Zea mays |
transcript | GRMZM2G179281_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGATEST: gi|74244789|gb|DT652703.1|DT652703
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
EST: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGATEST: gi|50324484|gb|CO519610.1|CO519610
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
EST: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGATEST: gi|71772785|gb|DR970710.1|DR970710
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
EST: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGATEST: gi|50324921|gb|CO520047.1|CO520047
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
EST: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGATEST: gi|50324920|gb|CO520046.1|CO520046
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
EST: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGATEST: gi|74244788|gb|DT652702.1|DT652702
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
EST: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
tctcacttgatctctagttttttgttgaaactaagttttggatctacttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCG
tctactt CT-rich tract
tagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttagattaattgtctcacttgatctctagttttttgttgaaactaagttttggatctacttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT