1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtgtctctaccatttatacttcagttgttgttttacaaagtgtcatttttgtgtgacaggatatcttttttttgttcttattgttagGTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACCAATCCTGTCTGAAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTAT
species | Zea mays |
transcript | GRMZM2G179097_T08 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACC GTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACCEST: gi|31664323|gb|CD573048.1|CD573048
genomic: CCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACCgtaagtgtct ... ttattgttagGTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACC
EST: CCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACC GTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACCEST: gi|211055687|gb|FL451729.1|FL451729
genomic: CCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACCgtaagtgtct ... ttattgttagGTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACC
EST: CCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACC GTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACC
genomic: CCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACCgtaagtgtct ... ttattgttagGTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACC
ttacaaagtgtcatttttgtgtgacaggatatcttttttttgttcttattgttagGTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACCAATCCTGTCTGAAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTAT
tcttttttttgttctt CT-rich tract
atatcttttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtctctaccatttatacttcagttgttgttttacaaagtgtcatttttgtgtgacaggatatcttttttttgttcttattgttagGTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACCAATCCTGTCTGAAGCTGGTTTTGATCTATTGAACAGACTGCTGACTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG