1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttggtaccctgtcaacttttttaatatagttggttttacccgtaagcatattgctgataattggttagtttactcgtaagcatattgctaggaatttgtaattactctcatgtgggagcctctggcattgggtctgcccttttcctatcctttgcagACAACCTATGAGAACTTCAGATACCGCTATGATCGGCGGGACAATCCGTACAACAGAGGGACCGTGAACAACTTCATGGAGATATTCTGCACCTCAGTCG
species | Zea mays |
transcript | GRMZM2G179002_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTGGGTGGTCTGTCTGTCTTCCATTTCTATCTCATGAGCACTAACCAG ACAACCTATGAGAACTTCAGATACCGCTATGATCGGCGGGACAATCCGTACEST: gi|211248421|gb|FL442236.1|FL442236
genomic: TTGTGGGTGGTCTGTCTGTCTTCCATTTCTATCTCATGAGCACTAACCAGgttggtaccc ... tcctttgcagACAACCTATGAGAACTTCAGATACCGCTATGATCGGCGGGACAATCCGTAC
EST: TCTATCTCATGAGCACTAACCAG ACAACCTATGAGAACTTCAGATACCGCTATGATCGGCGGGACAATCCGTAC
genomic: TCTATCTCATGAGCACTAACCAGgttggtaccc ... tcctttgcagACAACCTATGAGAACTTCAGATACCGCTATGATCGGCGGGACAATCCGTAC
tactctcatgtgggagcctctggcattgggtctgcccttttcctatcctttgcagACAACCTATGAGAACTTCAGATACCGCTATGATCGGCGGGACAATCCGTACAACAGAGGGACCGTGAACAACTTCATGGAGATATTCTGCACCTCAGTCG
tctgcccttttcctat CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtaccctgtcaacttttttaatatagttggttttacccgtaagcatattgctgataattggttagtttactcgtaagcatattgctaggaatttgtaattactctcatgtgggagcctctggcattgggtctgcccttttcctatcctttgcagACAACCTATGAGAACTTCAGATACCGCTATGATCGGCGGGACAATCCGTACAACAGAGGGACCGTGAACAACTTCATGGAGATATTCTGCACCTCAGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT