1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgcactgtccattttattttattttttaataattgttcattttatgttgatgaactcttttgctcttcctcaaagttctttcattctttgtttgtacagGTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAG
species | Zea mays |
transcript | GRMZM2G178996_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATATACGAGCACGTAATAATAGGATGACTCTCATGCATTATCTATGCAAG GTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCAEST: gi|211470380|gb|FL227252.1|FL227252
genomic: ATATACGAGCACGTAATAATAGGATGACTCTCATGCATTATCTATGCAAGgtgtgattcc ... gtttgtacagGTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCA
EST: ATATACGAGCACGTAATAATAGGATGACTCTCATGCATTATCTATGCAAG GTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCAEST: gi|211467359|gb|FL096460.1|FL096460
genomic: ATATACGAGCACGTAATAATAGGATGACTCTCATGCATTATCTATGCAAGgtgtgattcc ... gtttgtacagGTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCA
EST: AGGATGACTCTCATGCATTATCTATGCAAG GTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCAEST: gi|211470381|gb|FL227253.1|FL227253
genomic: AGGATGACTCTCATGCATTATCTATGCAAGgtgtgattcc ... gtttgtacagGTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCA
EST: ATATACGAGCACGTAATAATAGGATGACTCTCATGCATTATCTATGCAAG GTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCAEST: gi|211470378|gb|FL227250.1|FL227250
genomic: ATATACGAGCACGTAATAATAGGATGACTCTCATGCATTATCTATGCAAGgtgtgattcc ... gtttgtacagGTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCA
EST: ATATACGAGCACGTAATAATAGGATGACTCTCATGCATTATCTATGCAAG GTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTCCAEST: gi|211470379|gb|FL227251.1|FL227251
genomic: ATATACGAGCACGTAATAATAGGATGACTCTCATGCATTATCTATGCAAGgtgtgattcc ... gtttgtacagGTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCA
EST: ATATACGAGCACGTAATAATAGGATGACTCTCATGCATTATCTATGCAAG GTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCAEST: gi|32800407|gb|CD952643.1|CD952643
genomic: ATATACGAGCACGTAATAATAGGATGACTCTCATGCATTATCTATGCAAGgtgtgattcc ... gtttgtacagGTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCA
EST: ATATACGAGCACGTAATAATAGGATGACTCTGATGCATTATCTATGCAAG GTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATC
genomic: ATATACGAGCACGTAATAATAGGATGACTCTCATGCATTATCTATGCAAGgtgtgattcc ... gtttgtacagGTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATC
tgttgatgaactcttttgctcttcctcaaagttctttcattctttgtttgtacagGTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAG
tgttgat putative branch site (score: 13)
ttctttcattctttgt putative PPT
tttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcactgtccattttattttattttttaataattgttcattttatgttgatgaactcttttgctcttcctcaaagttctttcattctttgtttgtacagGTTCTTTCGGACAAGCTTCCTGAAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAG
-tgcactg
- - - - - - - - - - - - - - - - - - ttcattt
- - - - - - - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatt