1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatacagtgttattgttcattgcacaaataactcctatcagcattttgcatttttctcattgtttcttttagGTTTTTGACTTTGTGAAGCTAAATGAATTGTACTACGCTGGAAGCCATGGAATGGACATAATGGGCCCTGTTAGGAAGACTACTGACTCCAATGGCGTGG
species | Zea mays |
transcript | GRMZM2G178546_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGGTCTCGTGATAAG GTTTTTGACTTTGTGAAGCTAAATGAATTGTACTACGCTGGAAGCCATGGAEST: gi|31349982|gb|CD434339.1|CD434339
genomic: CGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGATCTCGTGATAAGgtatacagtg ... tttcttttagGTTTTTGACTTTGTGAAGCTAAATGAATTGTACTACGCTGGAAGCCATGGA
EST: CGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGGTCTCGTGATAAG GTTTTTGACTTTGTGAAGCTAAATGAATTGTACTACGCTGGAAGCCATGGAEST: gi|19351740|gb|BM896272.1|BM896272
genomic: CGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGATCTCGTGATAAGgtatacagtg ... tttcttttagGTTTTTGACTTTGTGAAGCTAAATGAATTGTACTACGCTGGAAGCCATGGA
EST: CGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGGTCTCGTGATAAG GTTTTTGACTTTGTGAAGCTAAATGAATTGTACTACGCTGGAAGCCATGGAEST: gi|22491306|gb|BU051229.1|BU051229
genomic: CGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGATCTCGTGATAAGgtatacagtg ... tttcttttagGTTTTTGACTTTGTGAAGCTAAATGAATTGTACTACGCTGGAAGCCATGGA
EST: CGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGGTCTCGTGATAAG GTTTTTGACTTTGTGAAGCTAAATGAATTGTACTACGCTGGAAGCCATGGAEST: gi|149101959|gb|EE287477.2|EE287477
genomic: CGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGATCTCGTGATAAGgtatacagtg ... tttcttttagGTTTTTGACTTTGTGAAGCTAAATGAATTGTACTACGCTGGAAGCCATGGA
EST: CGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGATCTCGTGATAAG GTTTTTGACTTTGTGAAGCTAAATGAATTGTACTA
genomic: CGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGATCTCGTGATAAGgtatacagtg ... tttcttttagGTTTTTGACTTTGTGAAGCTAAATGAATTGTACTA
cattgcacaaataactcctatcagcattttgcatttttctcattgtttcttttagGTTTTTGACTTTGTGAAGCTAAATGAATTGTACTACGCTGGAAGCCATGGAATGGACATAATGGGCCCTGTTAGGAAGACTACTGACTCCAATGGCGTGG
aaataac putative branch site (score: 2)
ttttgcatttttctca putative PPT
tttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacagtgttattgttcattgcacaaataactcctatcagcattttgcatttttctcattgtttcttttagGTTTTTGACTTTGTGAAGCTAAATGAATTGTACTACGCTGGAAGCCATGGAATGGACATAATGGGCCCTGTTAGGAAGACTACTGACTCCAATGGCGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA