1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcagaaataaggtttagatattttgtgacttcagcttgtacttgtattactattgatgttatttaaagctgccaatcttattcatctggttgtataacagGCACATCAAAGTATTTGCAAAGATTGAGAGTCTAGAATCTCTCAAGAACCTGAAAGACATCATAGAGGCATCTGATGGAGTTATGGTAGCACGAGGGGAT
species | Zea mays |
transcript | GRMZM2G177947_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTAATGATATAAAGCAGTTGAAAGCTTACCTCTCTAGAAGATCGTTAGA GCACATCAAAGEST: gi|9732862|gb|BE511614.1|BE511614
genomic: GCTAATGATATAAAGCAGTTGAAAGCTTACCTCTCTAGAAGATCGTTAGAgtgagtagat ... tgtataacagGCACATCAAAG
EST: GCTAATGATATAAAGCAGTTGAAAGCTTACCTCTCTAGAAGATCGTTAGA GCACATCAAAGTATTTGCAAAGATTGAGAGTCTAGAATCTCTCAAGAACCTEST: gi|76012665|gb|DT939835.1|DT939835
genomic: GCTAATGATATAAAGCAGTTGAAAGCTTACCTCTCTAGAAGATCGTTAGAgtgagtagat ... tgtataacagGCACATCAAAGTATTTGCAAAGATTGAGAGTCTAGAATCTCTCAAGAACCT
EST: GCTAATGATATAAAGCAGTTGAAAGCTTACCTCTCTAGAAGATCGTTAGA GCACATCAAAGTATTTG
genomic: GCTAATGATATAAAGCAGTTGAAAGCTTACCTCTCTAGAAGATCGTTAGAgtgagtagat ... tgtataacagGCACATCAAAGTATTTG
attactattgatgttatttaaagctgccaatcttattcatctggttgtataacagGCACATCAAAGTATTTGCAAAGATTGAGAGTCTAGAATCTCTCAAGAACCTGAAAGACATCATAGAGGCATCTGATGGAGTTATGGTAGCACGAGGGGAT
tattgat putative branch site (score: 75)
tattgatgttatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagaaataaggtttagatattttgtgacttcagcttgtacttgtattactattgatgttatttaaagctgccaatcttattcatctggttgtataacagGCACATCAAAGTATTTGCAAAGATTGAGAGTCTAGAATCTCTCAAGAACCTGAAAGACATCATAGAGGCATCTGATGGAGTTATGGTAGCACGAGGGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA